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Communication Dans Un Congrès Année : 2021

Nanopore Sequencing Simulator for DNA Data Storage

Nanopore Sequencing Simulator for DNA Data Storage

Résumé

The exponential increase of digital data and the limited capacity of current storage devices have made clear the need for exploring new storage solutions. Thanks to its biological properties, DNA has proven to be a potential candidate for this task, allowing the storage of information at a high density for hundreds or even thousands of years. With the release of nanopore sequencing technologies, DNA data storage is one step closer to become a reality. Many works have proposed solutions for the simulation of this sequencing step, aiming to ease the development of algorithms addressing nanopore-sequenced reads. However, these simulators target the sequencing of complete genomes, whose characteristics differ from the ones of synthetic DNA. This work presents a nanopore sequencing simulator targeting synthetic DNA on the context of DNA data storage.
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Dates et versions

hal-03648193 , version 1 (21-04-2022)

Identifiants

Citer

Eva Gil San Antonio, Thomas Heinis, Louis Carteron, Marc Antonini, Eva Gil San Antonio, et al.. Nanopore Sequencing Simulator for DNA Data Storage. 2021 International Conference on Visual Communications and Image Processing (VCIP), Dec 2021, Munich, France. pp.1-5, ⟨10.1109/VCIP53242.2021.9675388⟩. ⟨hal-03648193⟩
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