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Journal Articles Bioinformatics Year : 2013

DockAFM: benchmarking protein structures by docking under AFM topographs

Abstract

Proteins can adopt a variety of conformations. We present a simple server for scoring the agreement between 3D atomic structures and experimental envelopes obtained by atomic force microscopy. Three different structures of immunoglobulins (IgG) or blood coagulation factor V activated were tested and their agreement with several topographical surfaces was computed. This approach can be used to test structural variability within a family of proteins.

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hal-03247674 , version 1 (03-06-2021)

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Rui Chaves, Jean-Luc Pellequer. DockAFM: benchmarking protein structures by docking under AFM topographs. Bioinformatics, 2013, 29 (24), pp.3230-3231. ⟨10.1093/bioinformatics/btt561⟩. ⟨hal-03247674⟩
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