We present numerical evidence of a critical-like transition in an out-of-equilibrium mean-field description of a quantum system. By numerically solving the Gross-Pitaevskii equation we show that quantum turbulence displays an abrupt change between three-dimensional (3D) and two-dimensional (2D) behavior. The transition is observed both in quasi-2D flows in cubic domains (controlled by the amplitude of a 3D perturbation to the flow), as well as in flows in thin domains (controlled by the domain aspect ratio) in a configuration that mimics systems realized in laboratory experiments. In one regime the system displays a transfer of the energy towards smaller scales, while in the other the system displays a transfer of the energy towards larger scales and a coherent self-organization of the quantized vortices.