How machine learning can assist the interpretation of ab initio molecular dynamics simulations and conceptual understanding of chemistry. - Archive ouverte HAL
Article Dans Une Revue Chemical Science Année : 2019

How machine learning can assist the interpretation of ab initio molecular dynamics simulations and conceptual understanding of chemistry.

Florian Häse
  • Fonction : Auteur
Ignacio Fdez Galván
  • Fonction : Auteur
Alán Aspuru-Guzik
  • Fonction : Auteur
Roland Lindh
  • Fonction : Auteur
Morgane Vacher

Résumé

Molecular dynamics simulations are often key to the understanding of the mechanism, rate and yield of chemical reactions. One current challenge is the in-depth analysis of the large amount of data produced by the simulations, in order to produce valuable insight and general trends. In the present study, we propose to employ recent machine learning analysis tools to extract relevant information from simulation data without a priori knowledge on chemical reactions. This is demonstrated by training machine learning models to predict directly a specific outcome quantity of ab initio molecular dynamics simulations - the timescale of the decomposition of 1,2-dioxetane. The machine learning models accurately reproduce the dissociation time of the compound. Keeping the aim of gaining physical insight, it is demonstrated that, in order to make accurate predictions, the models evidence empirical rules that are, today, part of the common chemical knowledge. This opens the way for conceptual breakthroughs in chemistry where machine analysis would provide a source of inspiration to humans.

Domaines

Chimie

Dates et versions

hal-03018897 , version 1 (23-11-2020)

Identifiants

Citer

Florian Häse, Ignacio Fdez Galván, Alán Aspuru-Guzik, Roland Lindh, Morgane Vacher. How machine learning can assist the interpretation of ab initio molecular dynamics simulations and conceptual understanding of chemistry.. Chemical Science, 2019, 10 (8), pp.2298-2307. ⟨10.1039/c8sc04516j⟩. ⟨hal-03018897⟩
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