Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists
Annegret Kohler
(1)
,
Alan Kuo
(2)
,
Laszlo G. Nagy
(3, 4)
,
Emmanuelle Morin
(1)
,
Kerrie W. Barry
(2)
,
Francois Buscot
(5, 6)
,
Björn Canbäck
(7)
,
Cindy Choi
(2)
,
Nicolas Cichocki
(1)
,
Alicia Clum
(2)
,
Jan Colpaert
(8)
,
Alex Copeland
(2)
,
Mauricio D. Costa
(9)
,
Jeanne Dore
(10)
,
Dimitrios Floudas
(4)
,
Gilles Gay
(10)
,
Mariangela Girlanda
(11)
,
Bernard Henrissat
(12, 13)
,
Sylvie Herrmann
(5, 6)
,
Jaqueline Hess
(14)
,
Nils Högberg
(15)
,
Tomas Johansson
(7)
,
Hassine-Radhouane Khouja
(11)
,
Kurt Labutti
(2)
,
Urs Lahrmann
(16)
,
Anthony Levasseur
(12)
,
Erika A. Lindquist
(2)
,
Anna Lipzen
(2)
,
Roland Marmeisse
(10)
,
Elena Martino
(1, 11)
,
Claude Murat
(1)
,
Chew Y. Ngan
(2)
,
Uwe Nehls
(17)
,
Jonathan M. Plett
(1)
,
Anne Pringle
(18)
,
Robin A. Ohm
(2)
,
Silvia Perotto
(11)
,
Martina Peter
(19)
,
Robert Riley
(2)
,
François Rineau
(8)
,
Joske Ruytinx
(8)
,
Asaf Salamov
(2)
,
Firoz Shah
(7)
,
Hui Sun
(2)
,
Mika Tarkka
(5, 6)
,
Andrew Tritt
(2)
,
Claire Veneault-Fourrey
(1)
,
Alga Zuccaro
(16, 20)
,
. Mycorrhizal Genomics Initiative Consortium
,
Anders Tunlid
(7)
,
Igor V. Grigoriev
(2)
,
David S. Hibbett
(4)
,
Francis Martin
(1)
1
IAM -
Interactions Arbres-Microorganismes
2 JGI - Joint Genome Institute
3 MTA - Hungarian Academy of Sciences
4 Department of Biology
5 Department of Soil Ecology
6 iDiv - German Centre for Integrative Biodiversity Research
7 Department of Biology, Microbial Ecology Group
8 Centre for Environmental Sciences
9 Departamento de Microbiologia
10 LEM - Laboratoire d'Ecologie Microbienne - UMR 5557
11 Department of Life Sciences and Systems Biology [University of Turin]
12 AFMB - Architecture et fonction des macromolécules biologiques
13 Department of Biological Sciences
14 Department of Biosciences
15 Department of Forest Mycology and Plant Pathology
16 Department of Organismic Interactions [Marburg]
17 Department of Ecology, Biology/Chemistry, Botany,
18 Harvard Forest
19 Swiss Federal Institute for Forest, Snow and Landscape Research WSL
20 Universität zu Köln = University of Cologne
2 JGI - Joint Genome Institute
3 MTA - Hungarian Academy of Sciences
4 Department of Biology
5 Department of Soil Ecology
6 iDiv - German Centre for Integrative Biodiversity Research
7 Department of Biology, Microbial Ecology Group
8 Centre for Environmental Sciences
9 Departamento de Microbiologia
10 LEM - Laboratoire d'Ecologie Microbienne - UMR 5557
11 Department of Life Sciences and Systems Biology [University of Turin]
12 AFMB - Architecture et fonction des macromolécules biologiques
13 Department of Biological Sciences
14 Department of Biosciences
15 Department of Forest Mycology and Plant Pathology
16 Department of Organismic Interactions [Marburg]
17 Department of Ecology, Biology/Chemistry, Botany,
18 Harvard Forest
19 Swiss Federal Institute for Forest, Snow and Landscape Research WSL
20 Universität zu Köln = University of Cologne
Annegret Kohler
- Fonction : co premier-auteur
- PersonId : 741288
- IdHAL : annegret-kohler
- ORCID : 0000-0002-9575-9567
- IdRef : 161080588
Alan Kuo
- Fonction : co premier-auteur
- PersonId : 770173
- ORCID : 0000-0003-3514-3530
Emmanuelle Morin
- Fonction : co premier-auteur
- PersonId : 184935
- IdHAL : eamorin
- ORCID : 0000-0002-7268-972X
Jeanne Dore
- Fonction : Auteur
- PersonId : 1216586
- IdHAL : jeanne-dore
- ORCID : 0000-0003-3313-5975
Bernard Henrissat
- Fonction : Auteur
- PersonId : 833340
Roland Marmeisse
- Fonction : Auteur
- PersonId : 740207
- IdHAL : rolandmarmeisse
- ORCID : 0000-0003-1653-3517
- IdRef : 03291735X
Elena Martino
- Fonction : Auteur
- PersonId : 740222
- IdHAL : elena-martino72
- ORCID : 0000-0003-3446-2994
Claude Murat
- Fonction : Auteur
- PersonId : 740263
- IdHAL : claudemurat
- ORCID : 0000-0003-0685-7307
- IdRef : 084060603
Martina Peter
- Fonction : Auteur
- PersonId : 762624
- ORCID : 0000-0002-6365-6889
Claire Veneault-Fourrey
- Fonction : Auteur
- PersonId : 736756
- IdHAL : claire-veneault-fourrey
- ORCID : 0000-0001-9778-2659
- IdRef : 079706894
. Mycorrhizal Genomics Initiative Consortium
- Fonction : Auteur
Francis Martin
- Fonction : co dernier-auteur
- PersonId : 1203753
- ORCID : 0000-0002-4737-3715
- IdRef : 059918268
Résumé
To elucidate the genetic bases of mycorrhizal lifestyle evolution, we sequenced new fungal genomes, including 13 ectomycorrhizal (ECM), orchid (ORM) and ericoid (ERM) species, and five saprotrophs, which we analyzed along with other fungal genomes. Ectomycorrhizal fungi have a reduced complement of genes encoding plant cell wall-degrading enzymes (PCWDEs), as compared to their ancestral wood decayers. Nevertheless, they have retained a unique array of PCWDEs, thus suggesting that they possess diverse abilities to decompose lignocellulose. Similar functional categories of nonorthologous genes are induced in symbiosis. Of induced genes, 7-38% are orphan genes, including genes that encode secreted effector-like proteins. Convergent evolution of the mycorrhizal habit in fungi occurred via the repeated evolution of a 'symbiosis toolkit', with reduced numbers of PCWDEs and lineage-specific suites of mycorrhiza-induced genes.
Domaines
Sciences du Vivant [q-bio]| Origine | Fichiers éditeurs autorisés sur une archive ouverte |
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