<?xml version="1.0" encoding="utf-8"?>
<TEI xmlns="http://www.tei-c.org/ns/1.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:hal="http://hal.archives-ouvertes.fr/" xmlns:gml="http://www.opengis.net/gml/3.3/" xmlns:gmlce="http://www.opengis.net/gml/3.3/ce" version="1.1" xsi:schemaLocation="http://www.tei-c.org/ns/1.0 http://api.archives-ouvertes.fr/documents/aofr-sword.xsd">
  <teiHeader>
    <fileDesc>
      <titleStmt>
        <title>HAL TEI export of hal-02638010</title>
      </titleStmt>
      <publicationStmt>
        <distributor>CCSD</distributor>
        <availability status="restricted">
          <licence target="https://creativecommons.org/publicdomain/zero/1.0/">CC0 1.0 - Universal</licence>
        </availability>
        <date when="2026-05-14T01:17:52+02:00"/>
      </publicationStmt>
      <sourceDesc>
        <p part="N">HAL API Platform</p>
      </sourceDesc>
    </fileDesc>
  </teiHeader>
  <text>
    <body>
      <listBibl>
        <biblFull>
          <titleStmt>
            <title xml:lang="en">A reference genome for common bean and genome-wide analysis of dual domestications</title>
            <author role="co_first_author">
              <persName>
                <forename type="first">Jeremy</forename>
                <surname>Schmutz</surname>
              </persName>
              <idno type="halauthorid">251060-0</idno>
              <affiliation ref="#struct-255863"/>
              <affiliation ref="#struct-448581"/>
            </author>
            <author role="co_first_author">
              <persName>
                <forename type="first">Phillip E.</forename>
                <surname>Mcclean</surname>
              </persName>
              <idno type="halauthorid">1866267-0</idno>
              <affiliation ref="#struct-248421"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Sujan</forename>
                <surname>Mamidi</surname>
              </persName>
              <idno type="halauthorid">1866273-0</idno>
              <affiliation ref="#struct-248421"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">G. Albert</forename>
                <surname>Wu</surname>
              </persName>
              <idno type="halauthorid">1885427-0</idno>
              <affiliation ref="#struct-255863"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Steven B.</forename>
                <surname>Cannon</surname>
              </persName>
              <idno type="halauthorid">1885428-0</idno>
              <affiliation ref="#struct-318210"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Jane</forename>
                <surname>Grimwood</surname>
              </persName>
              <idno type="halauthorid">251059-0</idno>
              <affiliation ref="#struct-448581"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Jerry</forename>
                <surname>Jenkins</surname>
              </persName>
              <idno type="halauthorid">1228644-0</idno>
              <affiliation ref="#struct-448581"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Shengqiang</forename>
                <surname>Shu</surname>
              </persName>
              <idno type="halauthorid">492543-0</idno>
              <affiliation ref="#struct-255863"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Qijian</forename>
                <surname>Song</surname>
              </persName>
              <idno type="halauthorid">1885429-0</idno>
              <affiliation ref="#struct-303362"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Carolina</forename>
                <surname>Chavarro</surname>
              </persName>
              <idno type="halauthorid">1592599-0</idno>
              <affiliation ref="#struct-447806"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Mirayda</forename>
                <surname>Torres-Torres</surname>
              </persName>
              <idno type="halauthorid">1885430-0</idno>
              <affiliation ref="#struct-447806"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Valérie</forename>
                <surname>Geffroy</surname>
              </persName>
              <email type="md5">bf74b475c9e8f8cfa86c1b32f11fe57b</email>
              <email type="domain">u-psud.fr</email>
              <idno type="idhal" notation="string">valerie-geffroy</idno>
              <idno type="idhal" notation="numeric">748501</idno>
              <idno type="halauthorid" notation="string">1241137-748501</idno>
              <idno type="ORCID">https://orcid.org/0000-0003-2210-3636</idno>
              <idno type="IDREF">https://www.idref.fr/123981182</idno>
              <idno type="VIAF">https://viaf.org/viaf/217381323</idno>
              <idno type="ISNI">http://isni.org/isni/0000000359244707</idno>
              <affiliation ref="#struct-135779"/>
              <affiliation ref="#struct-238986"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Samira Mafi</forename>
                <surname>Moghaddam</surname>
              </persName>
              <idno type="halauthorid">1866271-0</idno>
              <affiliation ref="#struct-248421"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Dongying</forename>
                <surname>Gao</surname>
              </persName>
              <idno type="halauthorid">958451-0</idno>
              <affiliation ref="#struct-447806"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Brian</forename>
                <surname>Abernathy</surname>
              </persName>
              <idno type="halauthorid">956372-0</idno>
              <affiliation ref="#struct-447806"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Kerrie</forename>
                <surname>Barry</surname>
              </persName>
              <idno type="idhal" notation="numeric">776761</idno>
              <idno type="halauthorid" notation="string">993226-776761</idno>
              <idno type="ORCID">https://orcid.org/0000-0002-8999-6785</idno>
              <affiliation ref="#struct-255863"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Matthew</forename>
                <surname>Blair</surname>
              </persName>
              <idno type="halauthorid">993781-0</idno>
              <affiliation ref="#struct-364246"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Mark A.</forename>
                <surname>Brick</surname>
              </persName>
              <idno type="halauthorid">1885431-0</idno>
              <affiliation ref="#struct-497707"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Mansi</forename>
                <surname>Chovatia</surname>
              </persName>
              <idno type="halauthorid">1009378-0</idno>
              <affiliation ref="#struct-255863"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Paul</forename>
                <surname>Gepts</surname>
              </persName>
              <idno type="halauthorid">1701347-0</idno>
              <affiliation ref="#struct-255616"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">David M.</forename>
                <surname>Goodstein</surname>
              </persName>
              <idno type="halauthorid">1885432-0</idno>
              <affiliation ref="#struct-255863"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Michael</forename>
                <surname>Gonzales</surname>
              </persName>
              <idno type="halauthorid">1353324-0</idno>
              <affiliation ref="#struct-447806"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Uffe</forename>
                <surname>Hellsten</surname>
              </persName>
              <idno type="halauthorid">492529-0</idno>
              <affiliation ref="#struct-255863"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">David L.</forename>
                <surname>Hyten</surname>
              </persName>
              <idno type="halauthorid">1885433-0</idno>
              <affiliation ref="#struct-318210"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Gaofeng</forename>
                <surname>Jia</surname>
              </persName>
              <idno type="halauthorid">1885434-0</idno>
              <affiliation ref="#struct-318210"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">James D.</forename>
                <surname>Kelly</surname>
              </persName>
              <idno type="halauthorid">1885435-0</idno>
              <affiliation ref="#struct-235550"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Dave</forename>
                <surname>Kudrna</surname>
              </persName>
              <idno type="halauthorid">671664-0</idno>
              <affiliation ref="#struct-23624"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Rian</forename>
                <surname>Lee</surname>
              </persName>
              <idno type="halauthorid">1866270-0</idno>
              <affiliation ref="#struct-248421"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Manon M. S.</forename>
                <surname>Richard</surname>
              </persName>
              <idno type="idhal" notation="numeric">1176965</idno>
              <idno type="halauthorid" notation="string">1879506-1176965</idno>
              <idno type="ORCID">https://orcid.org/0000-0002-7903-024X</idno>
              <idno type="IDREF">https://www.idref.fr/183995899</idno>
              <idno type="VIAF">https://viaf.org/viaf/314929922</idno>
              <affiliation ref="#struct-238986"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Phillip N.</forename>
                <surname>Miklas</surname>
              </persName>
              <idno type="halauthorid">1885436-0</idno>
              <affiliation ref="#struct-303362"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Juan M.</forename>
                <surname>Osorno</surname>
              </persName>
              <idno type="halauthorid">1885437-0</idno>
              <affiliation ref="#struct-248421"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Josiane</forename>
                <surname>Rodrigues</surname>
              </persName>
              <idno type="halauthorid">1885438-0</idno>
              <affiliation ref="#struct-303362"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Vincent</forename>
                <surname>Thareau</surname>
              </persName>
              <email type="md5">5c6c25a2762be6bb76d8acbef8c11514</email>
              <email type="domain">gmail.com</email>
              <idno type="idhal" notation="numeric">1513117</idno>
              <idno type="halauthorid" notation="string">235024-1513117</idno>
              <affiliation ref="#struct-238986"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Carlos A.</forename>
                <surname>Urrea</surname>
              </persName>
              <idno type="halauthorid">1885439-0</idno>
              <affiliation ref="#struct-1034168"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Mei</forename>
                <surname>Wang</surname>
              </persName>
              <idno type="halauthorid">203429-0</idno>
              <affiliation ref="#struct-255863"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Yeisoo</forename>
                <surname>Yu</surname>
              </persName>
              <idno type="halauthorid">662876-0</idno>
              <affiliation ref="#struct-23624"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Ming</forename>
                <surname>Zhang</surname>
              </persName>
              <idno type="halauthorid">106586-0</idno>
              <affiliation ref="#struct-255863"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Rod A.</forename>
                <surname>Wing</surname>
              </persName>
              <idno type="halauthorid">946806-0</idno>
              <affiliation ref="#struct-23624"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Perry B.</forename>
                <surname>Cregan</surname>
              </persName>
              <idno type="halauthorid">1885440-0</idno>
              <affiliation ref="#struct-303362"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Daniel S.</forename>
                <surname>Rokhsar</surname>
              </persName>
              <idno type="halauthorid">1877364-0</idno>
              <affiliation ref="#struct-255863"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Scott A.</forename>
                <surname>Jackson</surname>
              </persName>
              <idno type="halauthorid">1879507-0</idno>
              <affiliation ref="#struct-447806"/>
            </author>
            <editor role="depositor">
              <persName>
                <forename>Migration</forename>
                <surname>ProdInra</surname>
              </persName>
              <email type="md5">9e5ed7d56b52b3d4383123b1ffb42236</email>
              <email type="domain">inrae.fr</email>
            </editor>
            <funder>Office of Science of the US Department of Energy - US Department of Agriculture National Institute for Food and Agriculture [DE-AC02-05CH11231, 2006-35300-17266]; National Science Foundation [DBI 0822258]; US Department of Agriculture Cooperative State Research, Education and Extension Service [2009-01860, 2009-01929]</funder>
          </titleStmt>
          <editionStmt>
            <edition n="v1" type="current">
              <date type="whenSubmitted">2020-05-28 08:57:32</date>
              <date type="whenModified">2025-03-21 15:12:20</date>
              <date type="whenReleased">2020-05-28 08:57:33</date>
              <date type="whenProduced">2014</date>
              <date type="whenEndEmbargoed">2020-05-28</date>
              <ref type="file" target="https://hal.inrae.fr/hal-02638010v1/document">
                <date notBefore="2020-05-28"/>
              </ref>
              <ref type="file" subtype="greenPublisher" n="1" target="https://hal.inrae.fr/hal-02638010v1/file/2014_Schmutz_NatureGen_1.pdf" id="file-2638010-2462384">
                <date notBefore="2020-05-28"/>
              </ref>
              <ref type="externalLink" target="https://www.nature.com/articles/ng.3008.pdf"/>
              <fs>
                <f name="inra_etatDocument_local" notation="string" n="VE">
                  <string>inra_etatDocument_local_VE</string>
                </f>
                <f name="inra_publicVise_local" notation="string" n="SC">
                  <string>inra_publicVise_local_SC</string>
                </f>
              </fs>
            </edition>
            <respStmt>
              <resp>contributor</resp>
              <name key="888556">
                <persName>
                  <forename>Migration</forename>
                  <surname>ProdInra</surname>
                </persName>
                <email type="md5">9e5ed7d56b52b3d4383123b1ffb42236</email>
                <email type="domain">inrae.fr</email>
              </name>
            </respStmt>
          </editionStmt>
          <publicationStmt>
            <distributor>CCSD</distributor>
            <idno type="halId">hal-02638010</idno>
            <idno type="halUri">https://hal.inrae.fr/hal-02638010</idno>
            <idno type="halBibtex">schmutz:hal-02638010</idno>
            <idno type="halRefHtml">&lt;i&gt;Nature Genetics&lt;/i&gt;, 2014, 46 (7), pp.707-713. &lt;a target="_blank" href="https://dx.doi.org/10.1038/ng.3008"&gt;&amp;#x27E8;10.1038/ng.3008&amp;#x27E9;&lt;/a&gt;</idno>
            <idno type="halRef">Nature Genetics, 2014, 46 (7), pp.707-713. &amp;#x27E8;10.1038/ng.3008&amp;#x27E9;</idno>
            <availability status="restricted">
              <licence target="https://creativecommons.org/licenses/by-nc-sa/4.0/">CC BY-NC-SA 4.0 - Attribution - Non-commercial use - ShareAlike<ref corresp="#file-2638010-2462384"/></licence>
            </availability>
          </publicationStmt>
          <seriesStmt>
            <idno type="stamp" n="AGROPARISTECH">AgroParisTech</idno>
            <idno type="stamp" n="CNRS">CNRS - Centre national de la recherche scientifique</idno>
            <idno type="stamp" n="UNIV-PSUD">Université Paris Sud - Paris XI</idno>
            <idno type="stamp" n="INRA">INRA - Institut national de la recherche agronomique</idno>
            <idno type="stamp" n="GQE" corresp="AGROPARISTECH">Génétique Quantitative et Evolution - Le Moulon</idno>
            <idno type="stamp" n="UNIV-PARIS-SACLAY">Université Paris-Saclay</idno>
            <idno type="stamp" n="AGREENIUM">Archive ouverte en agrobiosciences</idno>
            <idno type="stamp" n="UNIV-PSUD-SACLAY" corresp="UNIV-PARIS-SACLAY">Université Paris Sud pour Paris Saclay</idno>
            <idno type="stamp" n="INRAE">Institut National de Recherche en Agriculture, Alimentation et Environnement</idno>
            <idno type="stamp" n="BIOLOGIE_ET_AMELIORATION_DES_PLANTES">Département BAP INRAE</idno>
          </seriesStmt>
          <notesStmt>
            <note type="audience" n="2">International</note>
            <note type="popular" n="0">No</note>
            <note type="peer" n="1">Yes</note>
          </notesStmt>
          <sourceDesc>
            <biblStruct>
              <analytic>
                <title xml:lang="en">A reference genome for common bean and genome-wide analysis of dual domestications</title>
                <author role="co_first_author">
                  <persName>
                    <forename type="first">Jeremy</forename>
                    <surname>Schmutz</surname>
                  </persName>
                  <idno type="halauthorid">251060-0</idno>
                  <affiliation ref="#struct-255863"/>
                  <affiliation ref="#struct-448581"/>
                </author>
                <author role="co_first_author">
                  <persName>
                    <forename type="first">Phillip E.</forename>
                    <surname>Mcclean</surname>
                  </persName>
                  <idno type="halauthorid">1866267-0</idno>
                  <affiliation ref="#struct-248421"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Sujan</forename>
                    <surname>Mamidi</surname>
                  </persName>
                  <idno type="halauthorid">1866273-0</idno>
                  <affiliation ref="#struct-248421"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">G. Albert</forename>
                    <surname>Wu</surname>
                  </persName>
                  <idno type="halauthorid">1885427-0</idno>
                  <affiliation ref="#struct-255863"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Steven B.</forename>
                    <surname>Cannon</surname>
                  </persName>
                  <idno type="halauthorid">1885428-0</idno>
                  <affiliation ref="#struct-318210"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Jane</forename>
                    <surname>Grimwood</surname>
                  </persName>
                  <idno type="halauthorid">251059-0</idno>
                  <affiliation ref="#struct-448581"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Jerry</forename>
                    <surname>Jenkins</surname>
                  </persName>
                  <idno type="halauthorid">1228644-0</idno>
                  <affiliation ref="#struct-448581"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Shengqiang</forename>
                    <surname>Shu</surname>
                  </persName>
                  <idno type="halauthorid">492543-0</idno>
                  <affiliation ref="#struct-255863"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Qijian</forename>
                    <surname>Song</surname>
                  </persName>
                  <idno type="halauthorid">1885429-0</idno>
                  <affiliation ref="#struct-303362"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Carolina</forename>
                    <surname>Chavarro</surname>
                  </persName>
                  <idno type="halauthorid">1592599-0</idno>
                  <affiliation ref="#struct-447806"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Mirayda</forename>
                    <surname>Torres-Torres</surname>
                  </persName>
                  <idno type="halauthorid">1885430-0</idno>
                  <affiliation ref="#struct-447806"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Valérie</forename>
                    <surname>Geffroy</surname>
                  </persName>
                  <email type="md5">bf74b475c9e8f8cfa86c1b32f11fe57b</email>
                  <email type="domain">u-psud.fr</email>
                  <idno type="idhal" notation="string">valerie-geffroy</idno>
                  <idno type="idhal" notation="numeric">748501</idno>
                  <idno type="halauthorid" notation="string">1241137-748501</idno>
                  <idno type="ORCID">https://orcid.org/0000-0003-2210-3636</idno>
                  <idno type="IDREF">https://www.idref.fr/123981182</idno>
                  <idno type="VIAF">https://viaf.org/viaf/217381323</idno>
                  <idno type="ISNI">http://isni.org/isni/0000000359244707</idno>
                  <affiliation ref="#struct-135779"/>
                  <affiliation ref="#struct-238986"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Samira Mafi</forename>
                    <surname>Moghaddam</surname>
                  </persName>
                  <idno type="halauthorid">1866271-0</idno>
                  <affiliation ref="#struct-248421"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Dongying</forename>
                    <surname>Gao</surname>
                  </persName>
                  <idno type="halauthorid">958451-0</idno>
                  <affiliation ref="#struct-447806"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Brian</forename>
                    <surname>Abernathy</surname>
                  </persName>
                  <idno type="halauthorid">956372-0</idno>
                  <affiliation ref="#struct-447806"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Kerrie</forename>
                    <surname>Barry</surname>
                  </persName>
                  <idno type="idhal" notation="numeric">776761</idno>
                  <idno type="halauthorid" notation="string">993226-776761</idno>
                  <idno type="ORCID">https://orcid.org/0000-0002-8999-6785</idno>
                  <affiliation ref="#struct-255863"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Matthew</forename>
                    <surname>Blair</surname>
                  </persName>
                  <idno type="halauthorid">993781-0</idno>
                  <affiliation ref="#struct-364246"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Mark A.</forename>
                    <surname>Brick</surname>
                  </persName>
                  <idno type="halauthorid">1885431-0</idno>
                  <affiliation ref="#struct-497707"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Mansi</forename>
                    <surname>Chovatia</surname>
                  </persName>
                  <idno type="halauthorid">1009378-0</idno>
                  <affiliation ref="#struct-255863"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Paul</forename>
                    <surname>Gepts</surname>
                  </persName>
                  <idno type="halauthorid">1701347-0</idno>
                  <affiliation ref="#struct-255616"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">David M.</forename>
                    <surname>Goodstein</surname>
                  </persName>
                  <idno type="halauthorid">1885432-0</idno>
                  <affiliation ref="#struct-255863"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Michael</forename>
                    <surname>Gonzales</surname>
                  </persName>
                  <idno type="halauthorid">1353324-0</idno>
                  <affiliation ref="#struct-447806"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Uffe</forename>
                    <surname>Hellsten</surname>
                  </persName>
                  <idno type="halauthorid">492529-0</idno>
                  <affiliation ref="#struct-255863"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">David L.</forename>
                    <surname>Hyten</surname>
                  </persName>
                  <idno type="halauthorid">1885433-0</idno>
                  <affiliation ref="#struct-318210"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Gaofeng</forename>
                    <surname>Jia</surname>
                  </persName>
                  <idno type="halauthorid">1885434-0</idno>
                  <affiliation ref="#struct-318210"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">James D.</forename>
                    <surname>Kelly</surname>
                  </persName>
                  <idno type="halauthorid">1885435-0</idno>
                  <affiliation ref="#struct-235550"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Dave</forename>
                    <surname>Kudrna</surname>
                  </persName>
                  <idno type="halauthorid">671664-0</idno>
                  <affiliation ref="#struct-23624"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Rian</forename>
                    <surname>Lee</surname>
                  </persName>
                  <idno type="halauthorid">1866270-0</idno>
                  <affiliation ref="#struct-248421"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Manon M. S.</forename>
                    <surname>Richard</surname>
                  </persName>
                  <idno type="idhal" notation="numeric">1176965</idno>
                  <idno type="halauthorid" notation="string">1879506-1176965</idno>
                  <idno type="ORCID">https://orcid.org/0000-0002-7903-024X</idno>
                  <idno type="IDREF">https://www.idref.fr/183995899</idno>
                  <idno type="VIAF">https://viaf.org/viaf/314929922</idno>
                  <affiliation ref="#struct-238986"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Phillip N.</forename>
                    <surname>Miklas</surname>
                  </persName>
                  <idno type="halauthorid">1885436-0</idno>
                  <affiliation ref="#struct-303362"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Juan M.</forename>
                    <surname>Osorno</surname>
                  </persName>
                  <idno type="halauthorid">1885437-0</idno>
                  <affiliation ref="#struct-248421"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Josiane</forename>
                    <surname>Rodrigues</surname>
                  </persName>
                  <idno type="halauthorid">1885438-0</idno>
                  <affiliation ref="#struct-303362"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Vincent</forename>
                    <surname>Thareau</surname>
                  </persName>
                  <email type="md5">5c6c25a2762be6bb76d8acbef8c11514</email>
                  <email type="domain">gmail.com</email>
                  <idno type="idhal" notation="numeric">1513117</idno>
                  <idno type="halauthorid" notation="string">235024-1513117</idno>
                  <affiliation ref="#struct-238986"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Carlos A.</forename>
                    <surname>Urrea</surname>
                  </persName>
                  <idno type="halauthorid">1885439-0</idno>
                  <affiliation ref="#struct-1034168"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Mei</forename>
                    <surname>Wang</surname>
                  </persName>
                  <idno type="halauthorid">203429-0</idno>
                  <affiliation ref="#struct-255863"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Yeisoo</forename>
                    <surname>Yu</surname>
                  </persName>
                  <idno type="halauthorid">662876-0</idno>
                  <affiliation ref="#struct-23624"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Ming</forename>
                    <surname>Zhang</surname>
                  </persName>
                  <idno type="halauthorid">106586-0</idno>
                  <affiliation ref="#struct-255863"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Rod A.</forename>
                    <surname>Wing</surname>
                  </persName>
                  <idno type="halauthorid">946806-0</idno>
                  <affiliation ref="#struct-23624"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Perry B.</forename>
                    <surname>Cregan</surname>
                  </persName>
                  <idno type="halauthorid">1885440-0</idno>
                  <affiliation ref="#struct-303362"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Daniel S.</forename>
                    <surname>Rokhsar</surname>
                  </persName>
                  <idno type="halauthorid">1877364-0</idno>
                  <affiliation ref="#struct-255863"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Scott A.</forename>
                    <surname>Jackson</surname>
                  </persName>
                  <idno type="halauthorid">1879507-0</idno>
                  <affiliation ref="#struct-447806"/>
                </author>
              </analytic>
              <monogr>
                <idno type="halJournalId" status="VALID">7336</idno>
                <idno type="issn">1061-4036</idno>
                <idno type="eissn">1546-1718</idno>
                <title level="j">Nature Genetics</title>
                <imprint>
                  <publisher>Nature Publishing Group</publisher>
                  <biblScope unit="volume">46</biblScope>
                  <biblScope unit="issue">7</biblScope>
                  <biblScope unit="pp">707-713</biblScope>
                  <date type="datePub">2014</date>
                </imprint>
              </monogr>
              <idno type="doi">10.1038/ng.3008</idno>
              <idno type="prodinra">274808</idno>
              <idno type="pubmed">24908249</idno>
              <idno type="wos">000338093800011</idno>
              <ref target="http://www.nature.com/ng/index.html" type="seeAlso"/>
              <ref type="publisher">http://www.nature.com/ng/index.html</ref>
            </biblStruct>
          </sourceDesc>
          <profileDesc>
            <langUsage>
              <language ident="en">English</language>
            </langUsage>
            <textClass>
              <classCode scheme="halDomain" n="sdv">Life Sciences [q-bio]</classCode>
              <classCode scheme="halDomain" n="sdv.bv">Life Sciences [q-bio]/Vegetal Biology</classCode>
              <classCode scheme="vocinrae-old" n="phaseolus vulgaris">phaseolus vulgaris</classCode>
              <classCode scheme="vocinrae-old" n="soja">soja</classCode>
              <classCode scheme="vocinrae-old" n="domestication">domestication</classCode>
              <classCode scheme="vocinrae-old" n="génome">génome</classCode>
              <classCode scheme="vocinrae-old" n="haricot commun">haricot commun</classCode>
              <classCode scheme="halTypology" n="ART">Journal articles</classCode>
              <classCode scheme="halOldTypology" n="ART">Journal articles</classCode>
              <classCode scheme="halTreeTypology" n="ART">Journal articles</classCode>
            </textClass>
            <abstract xml:lang="en">
              <p>Common bean (Phaseolus vulgaris L.) is the most important grain legume for human consumption and has a role in sustainable agriculture owing to its ability to fix atmospheric nitrogen. We assembled 473 Mb of the 587-Mb genome and genetically anchored 98% of this sequence in 11 chromosome-scale pseudomolecules. We compared the genome for the common bean against the soybean genome to find changes in soybean resulting from polyploidy. Using resequencing of 60 wild individuals and 100 landraces from the genetically differentiated Mesoamerican and Andean gene pools, we confirmed 2 independent domestications from genetic pools that diverged before human colonization. Less than 10% of the 74 Mb of sequence putatively involved in domestication was shared by the two domestication events. We identified a set of genes linked with increased leaf and seed size and combined these results with quantitative trait locus data from Mesoamerican cultivars. Genes affected by domestication may be useful for genomics-enabled crop improvement.</p>
            </abstract>
          </profileDesc>
        </biblFull>
      </listBibl>
    </body>
    <back>
      <listOrg type="structures">
        <org type="laboratory" xml:id="struct-255863" status="INCOMING">
          <orgName>Joint Genome institute</orgName>
          <desc>
            <address>
              <addrLine>Walnut Creek</addrLine>
              <country key="US"/>
            </address>
          </desc>
          <listRelation>
            <relation active="#struct-359292" type="direct"/>
          </listRelation>
        </org>
        <org type="institution" xml:id="struct-448581" status="INCOMING">
          <orgName>Hudson Alpha Institute for Biotechnology</orgName>
          <desc>
            <address>
              <country key="US"/>
            </address>
          </desc>
        </org>
        <org type="laboratory" xml:id="struct-248421" status="INCOMING">
          <orgName>Department of Plant Sciences</orgName>
          <desc>
            <address>
              <addrLine>FARGO,</addrLine>
              <country key="US"/>
            </address>
          </desc>
          <listRelation>
            <relation active="#struct-440606" type="direct"/>
          </listRelation>
        </org>
        <org type="regroupinstitution" xml:id="struct-318210" status="VALID">
          <idno type="ROR">https://ror.org/02d2m2044</idno>
          <orgName>USDA-ARS : Agricultural Research Service</orgName>
          <desc>
            <address>
              <country key="US"/>
            </address>
            <ref type="url">https://www.ars.usda.gov/</ref>
          </desc>
        </org>
        <org type="institution" xml:id="struct-303362" status="VALID">
          <idno type="ROR">https://ror.org/01na82s61</idno>
          <orgName>United States Department of Agriculture</orgName>
          <orgName type="acronym">USDA</orgName>
          <desc>
            <address>
              <country key="US"/>
            </address>
            <ref type="url">https://www.usda.gov/</ref>
          </desc>
        </org>
        <org type="laboratory" xml:id="struct-447806" status="INCOMING">
          <orgName>Center for Applied Genetic Technologies</orgName>
          <desc>
            <address>
              <country key="US"/>
            </address>
          </desc>
          <listRelation>
            <relation active="#struct-303339" type="direct"/>
          </listRelation>
        </org>
        <org type="laboratory" xml:id="struct-135779" status="OLD">
          <orgName>Génétique Quantitative et Evolution - Le Moulon (Génétique Végétale)</orgName>
          <orgName type="acronym">GQE-Le Moulon</orgName>
          <date type="end">2019-12-31</date>
          <desc>
            <address>
              <addrLine>UMR de Génétique Quantitative et Evolution - Le Moulon,   Ferme du Moulon F-91190 GIF SUR YVETTE</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">http://moulon.inra.fr/index.php/fr</ref>
          </desc>
          <listRelation>
            <relation name="UMR0320" active="#struct-92114" type="direct"/>
            <relation active="#struct-92966" type="direct"/>
            <relation active="#struct-148117" type="direct"/>
            <relation name="UMR8120" active="#struct-441569" type="direct"/>
          </listRelation>
        </org>
        <org type="laboratory" xml:id="struct-238986" status="OLD">
          <orgName>Institut de Biologie des Plantes</orgName>
          <orgName type="acronym">IBP</orgName>
          <date type="start">1994-07-05</date>
          <date type="end">2014-12-31</date>
          <desc>
            <address>
              <addrLine>Bât 630, Université Paris-sud 91405-Orsay Cedex</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">http://www.ibp.u-psud.fr</ref>
          </desc>
          <listRelation>
            <relation active="#struct-92966" type="direct"/>
            <relation name="UMR8618" active="#struct-441569" type="direct"/>
          </listRelation>
        </org>
        <org type="institution" xml:id="struct-364246" status="VALID">
          <idno type="ISNI">0000 0001 2284 9820</idno>
          <idno type="ROR">https://ror.org/01fpczx89</idno>
          <orgName>Tennessee State University</orgName>
          <desc>
            <address>
              <addrLine>3500 John A. Merritt Boulevard , Nashville, TN 37209</addrLine>
              <country key="US"/>
            </address>
            <ref type="url">http://www.tnstate.edu</ref>
          </desc>
        </org>
        <org type="laboratory" xml:id="struct-497707" status="VALID">
          <orgName>Department of Soil and Crop Sciences [Fort Collins]</orgName>
          <desc>
            <address>
              <addrLine>200 W. Lake Street, Fort Collins, Colorado 80523, USA</addrLine>
              <country key="US"/>
            </address>
          </desc>
          <listRelation>
            <relation active="#struct-97463" type="direct"/>
          </listRelation>
        </org>
        <org type="laboratory" xml:id="struct-255616" status="INCOMING">
          <orgName>Department of Plant Sciences</orgName>
          <desc>
            <address>
              <country key="US"/>
            </address>
          </desc>
          <listRelation>
            <relation active="#struct-320813" type="direct"/>
            <relation active="#struct-471291" type="indirect"/>
          </listRelation>
        </org>
        <org type="institution" xml:id="struct-235550" status="VALID">
          <idno type="ROR">https://ror.org/05hs6h993</idno>
          <orgName>Michigan State University [East Lansing]</orgName>
          <desc>
            <address>
              <addrLine>220 Trowbridge Rd East Lansing, MI 48824</addrLine>
              <country key="US"/>
            </address>
            <ref type="url">https://msu.edu/</ref>
          </desc>
          <listRelation>
            <relation active="#struct-566438" type="direct"/>
          </listRelation>
        </org>
        <org type="institution" xml:id="struct-23624" status="VALID">
          <idno type="ROR">https://ror.org/03m2x1q45</idno>
          <orgName>University of Arizona</orgName>
          <desc>
            <address>
              <addrLine>Tucson AZ 85721 USA</addrLine>
              <country key="US"/>
            </address>
            <ref type="url">http://www.arizona.edu/</ref>
          </desc>
        </org>
        <org type="institution" xml:id="struct-1034168" status="INCOMING">
          <orgName>University of Nebraska</orgName>
          <desc>
            <address>
              <country key="US"/>
            </address>
          </desc>
          <listRelation>
            <relation active="#struct-1031275" type="direct"/>
          </listRelation>
        </org>
        <org type="institution" xml:id="struct-359292" status="INCOMING">
          <orgName>United States Department of Energy</orgName>
          <desc>
            <address>
              <country key="US"/>
            </address>
          </desc>
        </org>
        <org type="institution" xml:id="struct-440606" status="VALID">
          <idno type="ROR">https://ror.org/05h1bnb22</idno>
          <orgName>North Dakota State University</orgName>
          <orgName type="acronym">NDSU</orgName>
          <desc>
            <address>
              <addrLine>1340 Administration Ave., Fargo, ND 58102</addrLine>
              <country key="US"/>
            </address>
            <ref type="url">https://www.ndsu.edu/</ref>
          </desc>
        </org>
        <org type="institution" xml:id="struct-303339" status="VALID">
          <idno type="ROR">https://ror.org/00te3t702</idno>
          <orgName>University of Georgia [USA]</orgName>
          <desc>
            <address>
              <addrLine>Athens, GA 30602</addrLine>
              <country key="US"/>
            </address>
            <ref type="url">https://www.uga.edu/</ref>
          </desc>
        </org>
        <org type="institution" xml:id="struct-92114" status="OLD">
          <idno type="ROR">https://ror.org/01x3gbx83</idno>
          <orgName>Institut National de la Recherche Agronomique</orgName>
          <orgName type="acronym">INRA</orgName>
          <date type="start">1946-05-18</date>
          <date type="end">2019-12-31</date>
          <desc>
            <address>
              <country key="FR"/>
            </address>
            <ref type="url">http://www.inra.fr</ref>
          </desc>
        </org>
        <org type="institution" xml:id="struct-92966" status="OLD">
          <idno type="ROR">https://ror.org/028rypz17</idno>
          <orgName>Université Paris-Sud - Paris 11</orgName>
          <orgName type="acronym">UP11</orgName>
          <date type="end">2019-12-31</date>
          <desc>
            <address>
              <addrLine>Bâtiment 300 - 91405 Orsay cedex</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">http://www.u-psud.fr/</ref>
          </desc>
        </org>
        <org type="institution" xml:id="struct-148117" status="VALID">
          <idno type="IdRef">139408088</idno>
          <idno type="ROR">https://ror.org/02kbmgc12</idno>
          <orgName>AgroParisTech</orgName>
          <date type="start">2007-01-01</date>
          <desc>
            <address>
              <addrLine>22 place de l'Agronomie CS 20040 91123 Palaiseau cedex</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">https://www.agroparistech.fr/</ref>
          </desc>
        </org>
        <org type="regroupinstitution" xml:id="struct-441569" status="VALID">
          <idno type="IdRef">02636817X</idno>
          <idno type="ISNI">0000000122597504</idno>
          <idno type="ROR">https://ror.org/02feahw73</idno>
          <orgName>Centre National de la Recherche Scientifique</orgName>
          <orgName type="acronym">CNRS</orgName>
          <date type="start">1939-10-19</date>
          <desc>
            <address>
              <country key="FR"/>
            </address>
            <ref type="url">https://www.cnrs.fr/</ref>
          </desc>
        </org>
        <org type="institution" xml:id="struct-97463" status="VALID">
          <idno type="ROR">https://ror.org/03k1gpj17</idno>
          <orgName>Colorado State University [Fort Collins]</orgName>
          <orgName type="acronym">CSU</orgName>
          <desc>
            <address>
              <addrLine>Colorado State University, Fort Collins, Colorado 80523 USA</addrLine>
              <country key="US"/>
            </address>
            <ref type="url">http://www.colostate.edu/</ref>
          </desc>
        </org>
        <org type="institution" xml:id="struct-320813" status="VALID">
          <idno type="IdRef">03243975X</idno>
          <idno type="ROR">https://ror.org/05rrcem69</idno>
          <orgName>University of California [Davis]</orgName>
          <orgName type="acronym">UC Davis</orgName>
          <date type="start">1905-01-01</date>
          <desc>
            <address>
              <addrLine>One Shields Avenue, , Davis, CA 95616-5294</addrLine>
              <country key="US"/>
            </address>
            <ref type="url">https://www.ucdavis.edu/</ref>
          </desc>
          <listRelation>
            <relation active="#struct-471291" type="direct"/>
          </listRelation>
        </org>
        <org type="regroupinstitution" xml:id="struct-471291" status="VALID">
          <idno type="ROR">https://ror.org/00pjdza24</idno>
          <orgName>University of California</orgName>
          <orgName type="acronym">UC</orgName>
          <date type="start">1869-01-01</date>
          <desc>
            <address>
              <country key="US"/>
            </address>
            <ref type="url">https://www.universityofcalifornia.edu/</ref>
          </desc>
        </org>
        <org type="regroupinstitution" xml:id="struct-566438" status="VALID">
          <idno type="ROR">https://ror.org/05hs6h993</idno>
          <orgName>Michigan State University System</orgName>
          <desc>
            <address>
              <addrLine>Michigan</addrLine>
              <country key="US"/>
            </address>
            <ref type="url">https://msu.edu/</ref>
          </desc>
        </org>
        <org type="regroupinstitution" xml:id="struct-1031275" status="INCOMING">
          <orgName>Partenaires INRAE</orgName>
          <desc>
            <address>
              <addrLine>Cette structure regroupe l'ensemble des structures créées pour la reprise des données ProdInra</addrLine>
              <country key="FR"/>
            </address>
          </desc>
        </org>
      </listOrg>
    </back>
  </text>
</TEI>