The Mediterranean basin is a hotspot of mercury (Hg) contamination owing to intense anthropogenic emissions, volcanic activity and oligotrophic conditions. Little work has been done to assess the sources of Hg exposure for seabirds and, particularly, the physiological consequences of Hg bioaccumulation. In this study, we (i) describe the individual and temporal variation in blood concentration of total Hg (THg) over three breeding seasons, (ii) identify the factors that affect the THg exposure and (iii) determine the individual- and population-level connections between THg and blood-based markers of oxidative status in chicks of Scopoli’s shearwaters (Calonectris diomedea) breeding on the island of Linosa in the southern Mediterranean. We carried out the work on chicks near fledging because they are fed with prey captured near the colony, thus their Hg levels reflect local contamination. The concentration of THg in erythrocytes varied from 0.23 to 4.29 µg g-1 dw. Chicks that were fed upon higher trophic level prey (i.e., higher δ15N values) had higher THg levels. Individual variation in THg concentrations was not explained by parental identity, sex nor δ13C values. There was significant variation in THg among chicks born from the same mother in different years. We found significant correlations between THg and markers of oxidative status; however, these correlations were no longer significant when we took into account the annual variation in mean values of all metrics. Males with higher values of body condition index had higher blood THg, while THg and body condition index were not correlated in females. Our data indicate that THg levels were moderate to high if compared to other seabirds. However, there is little evidence for harmful short-term detrimental effects owing to THg exposure.