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Article Dans Une Revue Conservation Genetics Resources Année : 2019

Development of nuclear and plastid SNP markers for genetic studies of Dipteryx tree species in Amazonia

Résumé

We developed nuclear and plastid single nucleotide polymorphism (SNP) and insertion/deletion (INDEL) markers for Dipteryx species using a combination of restriction associated DNA sequencing (RADSeq) and low coverage MiSeq genome sequencing. Of the total 315 loci genotyped using a MassARRAY platform, 292 loci were variable and polymorphic among the 73 sampled individuals from French Guiana, Brasil, Peru, and Bolivia. A final set of 56 nuclear SNPs, 26 chloroplast SNPs, 2 chloroplast INDELs, and 32 mitochondrial SNPs identifying significant population structure was developed. This set of loci will be useful for studies on population genetics of Dipteryx species in Amazonia.
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Dates et versions

hal-02215841 , version 1 (31-07-2019)

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Euridice N. Honorio Coronado, Céline Blanc-Jolivet, Malte Mader, Carmen R. García-Dávila, Alexandre M. Sebbenn, et al.. Development of nuclear and plastid SNP markers for genetic studies of Dipteryx tree species in Amazonia. Conservation Genetics Resources, 2019, 11 (37), pp.1-4. ⟨10.1007/s12686-019-01081-3⟩. ⟨hal-02215841⟩
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