Computational design of symmetrical eight-bladed β-propeller proteins - Archive ouverte HAL
Article Dans Une Revue International Union of Crystallography journal Année : 2019

Computational design of symmetrical eight-bladed β-propeller proteins

Hiroki Noguchi
Christine Addy
  • Fonction : Auteur
Staf Wouters
  • Fonction : Auteur
Bram Mylemans
  • Fonction : Auteur
Luc van Meervelt
Kam Y. J. Zhang
  • Fonction : Auteur
Jeremy R. H. Tame
  • Fonction : Auteur
Arnout R. D. Voet
  • Fonction : Auteur

Résumé

β-Propeller proteins form one of the largest families of protein structures, with a pseudo-symmetrical fold made up of subdomains called blades. They are not only abundant but are also involved in a wide variety of cellular processes, often by acting as a platform for the assembly of protein complexes. WD40 proteins are a subfamily of propeller proteins with no intrinsic enzymatic activity, but their stable, modular architecture and versatile surface have allowed evolution to adapt them to many vital roles. By computationally reverse-engineering the duplication, fusion and diversification events in the evolutionary history of a WD40 protein, a perfectly symmetrical homologue called Tako8 was made. If two or four blades of Tako8 are expressed as single polypeptides, they do not self-assemble to complete the eight-bladed architecture, which may be owing to the closely spaced negative charges inside the ring. A different computational approach was employed to redesign Tako8 to create Ika8, a fourfold-symmetrical protein in which neighbouring blades carry compensating charges. Ika2 and Ika4, carrying two or four blades per subunit, respectively, were found to assemble spontaneously into a complete eight-bladed ring in solution. These artificial eight-bladed rings may find applications in bionanotechnology and as models to study the folding and evolution of WD40 proteins.
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hal-02154353 , version 1 (26-05-2020)

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Hiroki Noguchi, Christine Addy, David Simoncini, Staf Wouters, Bram Mylemans, et al.. Computational design of symmetrical eight-bladed β-propeller proteins. International Union of Crystallography journal, 2019, 6 (1), pp.46-55. ⟨10.1107/S205225251801480X⟩. ⟨hal-02154353⟩
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