We studied a longitudinal transect in the Mediterranean Sea (MS) and along this transect, the influence of an-ticyclonic eddies at three long duration (LD) stations. The deep chlorophyll maximum depth, the euphotic layer depth and the top of the nitracline depth are clearly correlated outside of the eddies, and deepen from the oligotrophic western to the ultraoligotrophic eastern MS. We provide evidence that the locations of the three LD stations studied were near the axis of the eddies. Their diameters were close to 100 km and the studied areas were less than 10 km from the centre of the eddies. The positions of the LD stations are marked by an increase in the flux function and a decrease in apparent oxygen utilization (AOU) and in excess density (σ), as expected for anticyclonic eddies. Integrated mean primary production measured in situ inside the three studied eddies confirms the previous conclusion that integrated primary production (IPP) about 150 mgC m −2 d −1 may appear as a lower limit for IPP during strong oligotrophic conditions. The mesoscale activity is strong enough to locally modify the very well-documented western-to-eastern gradient of trophic conditions in the MS. We proposed a new calculation for mixed layer depths (MLDs) enabling the determination of MLD to take into consideration processes occurring with time scales ranging from a few hours to several days, and also the winter MLD. Studying the main physical, chemical and dynam-ical characteristics of the three eddies enables us to consider that the vorticity barrier prevents any strong mixing and ad-vection of outer water inside the eddy and explains why the depth range of eddies starts from the surface. As a first approximation , the anticyclonic eddies could be considered as closed systems dating back to the previous winter, making possible to draw first-order budgets. The daily new N-input in the photic zone is virtually identical to the N-export measured at 230 m by drifting traps. This means that the eddies are close to an equilibrium state where input is equal to loss. The annual N-input by winter convection, which is a fundamental criterion for new nutrient availability, may be extremely variable inside eddies, with W-MLD varying from 90.5 m at the western station to 396.5 m at the eastern station. W-MLDs are always deeper inside the eddies than outside where they are in keeping with climatological averages. AOU was low inside the eddies; this together with the near-identical export measured at 230 and 460 m seems to indicate that eddy cores are areas where low mineralisation of particulate organic matter occurs. "In" and "out" AOU comparisons indicate lower mineralisation inside the eddies suggesting a higher efficiency for CO 2 sequestration via sedimentation of particulate organic matter. The three eddies are enriched in dissolved organic carbon (DOC). Sequestration of CO 2 by vertical export of accumulated DOC therefore seems to be higher inside eddies. The relative importance of DOC transport in the biological pump is probably one of the main characteristics of low-P low chlorophyll (LPLC) areas, and it is likely to be reinforced inside anticyclonic eddies. The numerous anticyclonic eddies in the MS are likely to influence the water masses and their dispersion, and therefore have a strong impact on the biogeochemical properties at the scale of the MS.