[1] Heterotrophic nanoflagellates and ciliates and their herbivorous activity were studied within the framework of the Programme Océan Multidisciplinaire Méso Echelle (POMME) in the northeastern Atlantic between 16°–22°W and 38°–45°N during winter, spring, and late summer/autumn 2001. Ciliate ingestion rates of Synechococcus and eukaryotic algae were measured using fluorescently labeled prey. Heterotrophic nanoflagellate ingestion rates of Synechococcus and Prochlorococcus were also estimated. Heterotrophic nanoflagellate and ciliate standing stock within the surface layer (0–100 m) showed seasonal variation, with maximal values in spring (866 mg C m À2 and 637 mg C m À2 , respectively). Oligotrichs dominated the ciliate assemblages, except at one site visited during spring, where a tintinnid bloom was observed. Ingestion of photosynthetic cells less than 10 mm in size was positively correlated (r = 0.7, p < 0.05, n = 12) with primary production and accounted for 2–94% of this. Phytoplankton consumption reflected differences in the evolution of the phytoplankton bloom and in the structure of the microbial food web, both associated with the strong mesoscale hydrodynamic variability of the study area. In that context it is worthy to note that when tintinnids reached high abundances locally (1260 cells L À1), their impact as phytoplankton grazers was important and reached 69% of primary production. Generally, heterotrophic nanoflagellates and ciliates were relatively more important in determining the fate of phytogenic carbon during spring. Another interesting feature of primary production consumption was that during the autumn, when Prochlorococcus dominated the phytoplankton community, the protozoan grazing activity was ineffective in regulating the fate of primary producers. Citation: Karayanni, H., U. Christaki, F. Van Wambeke, M. Denis, and T. Moutin (2005), Influence of ciliated protozoa and heterotrophic nanoflagellates on the fate of primary production in the northeast Atlantic Ocean,