<?xml version="1.0" encoding="utf-8"?>
<TEI xmlns="http://www.tei-c.org/ns/1.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:hal="http://hal.archives-ouvertes.fr/" xmlns:gml="http://www.opengis.net/gml/3.3/" xmlns:gmlce="http://www.opengis.net/gml/3.3/ce" version="1.1" xsi:schemaLocation="http://www.tei-c.org/ns/1.0 http://api.archives-ouvertes.fr/documents/aofr-sword.xsd">
  <teiHeader>
    <fileDesc>
      <titleStmt>
        <title>HAL TEI export of hal-01606705</title>
      </titleStmt>
      <publicationStmt>
        <distributor>CCSD</distributor>
        <availability status="restricted">
          <licence target="https://creativecommons.org/publicdomain/zero/1.0/">CC0 1.0 - Universal</licence>
        </availability>
        <date when="2026-05-22T06:55:04+02:00"/>
      </publicationStmt>
      <sourceDesc>
        <p part="N">HAL API Platform</p>
      </sourceDesc>
    </fileDesc>
  </teiHeader>
  <text>
    <body>
      <listBibl>
        <biblFull>
          <titleStmt>
            <title xml:lang="en">Evolutionary dynamics of satellite DNA repeats from Phaseolus beans</title>
            <author role="aut">
              <persName>
                <forename type="first">Tiago</forename>
                <surname>Ribeiro</surname>
              </persName>
              <idno type="halauthorid">1241134-0</idno>
              <affiliation ref="#struct-516273"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Karla G. B.</forename>
                <surname>dos Santos</surname>
              </persName>
              <idno type="halauthorid">1241135-0</idno>
              <affiliation ref="#struct-516273"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Manon</forename>
                <surname>Richard</surname>
              </persName>
              <idno type="idhal" notation="numeric">1176965</idno>
              <idno type="halauthorid" notation="string">1050072-1176965</idno>
              <idno type="ORCID">https://orcid.org/0000-0002-7903-024X</idno>
              <idno type="IDREF">https://www.idref.fr/183995899</idno>
              <idno type="VIAF">https://viaf.org/viaf/314929922</idno>
              <affiliation ref="#struct-521154"/>
              <affiliation ref="#struct-303171"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Mireille</forename>
                <surname>Sévignac</surname>
              </persName>
              <idno type="halauthorid">1241136-0</idno>
              <affiliation ref="#struct-521154"/>
              <affiliation ref="#struct-300301"/>
              <affiliation ref="#struct-303171"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Vincent</forename>
                <surname>Thareau</surname>
              </persName>
              <email type="md5">5c6c25a2762be6bb76d8acbef8c11514</email>
              <email type="domain">gmail.com</email>
              <idno type="idhal" notation="numeric">1513117</idno>
              <idno type="halauthorid" notation="string">235024-1513117</idno>
              <affiliation ref="#struct-521154"/>
              <affiliation ref="#struct-303171"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Valérie</forename>
                <surname>Geffroy</surname>
              </persName>
              <email type="md5">bf74b475c9e8f8cfa86c1b32f11fe57b</email>
              <email type="domain">u-psud.fr</email>
              <idno type="idhal" notation="string">valerie-geffroy</idno>
              <idno type="idhal" notation="numeric">748501</idno>
              <idno type="halauthorid" notation="string">1241137-748501</idno>
              <idno type="ORCID">https://orcid.org/0000-0003-2210-3636</idno>
              <idno type="IDREF">https://www.idref.fr/123981182</idno>
              <idno type="VIAF">https://viaf.org/viaf/217381323</idno>
              <idno type="ISNI">http://isni.org/isni/0000000359244707</idno>
              <affiliation ref="#struct-521154"/>
              <affiliation ref="#struct-303171"/>
            </author>
            <author role="crp">
              <persName>
                <forename type="first">Andrea</forename>
                <surname>Pedrosa-Harand</surname>
              </persName>
              <email type="md5">21bb125b7ec2628079aba3713acc1a20</email>
              <email type="domain">pesquisador.cnpq.br</email>
              <idno type="idhal" notation="numeric">1019469</idno>
              <idno type="halauthorid" notation="string">1241138-1019469</idno>
              <affiliation ref="#struct-516273"/>
            </author>
            <editor role="depositor">
              <persName>
                <forename>Archive Ouverte</forename>
                <surname>ProdInra</surname>
              </persName>
              <email type="md5">9e5ed7d56b52b3d4383123b1ffb42236</email>
              <email type="domain">inrae.fr</email>
            </editor>
            <funder>Platform of Sequencing-LABCEN/CCB at UFPE; Labex SPS (INRA, France); 3P project; Conselho Nacional de Desenvolvimento Cientifico e Tecnologico (CNPq), Brazil [481477/2013-6, 309200/2013-0]</funder>
          </titleStmt>
          <editionStmt>
            <edition n="v1" type="current">
              <date type="whenSubmitted">2017-10-02 23:02:04</date>
              <date type="whenModified">2025-04-17 09:48:14</date>
              <date type="whenReleased">2017-10-02 23:02:04</date>
              <date type="whenProduced">2017</date>
              <fs>
                <f name="inra_publicVise_local" notation="string" n="SC">
                  <string>inra_publicVise_local_SC</string>
                </f>
              </fs>
            </edition>
            <respStmt>
              <resp>contributor</resp>
              <name key="132775">
                <persName>
                  <forename>Archive Ouverte</forename>
                  <surname>ProdInra</surname>
                </persName>
                <email type="md5">9e5ed7d56b52b3d4383123b1ffb42236</email>
                <email type="domain">inrae.fr</email>
              </name>
            </respStmt>
          </editionStmt>
          <publicationStmt>
            <distributor>CCSD</distributor>
            <idno type="halId">hal-01606705</idno>
            <idno type="halUri">https://hal.science/hal-01606705</idno>
            <idno type="halBibtex">ribeiro:hal-01606705</idno>
            <idno type="halRefHtml">&lt;i&gt;Protoplasma&lt;/i&gt;, 2017, 254 (2), pp.791-801. &lt;a target="_blank" href="https://dx.doi.org/10.1007/s00709-016-0993-8"&gt;&amp;#x27E8;10.1007/s00709-016-0993-8&amp;#x27E9;&lt;/a&gt;</idno>
            <idno type="halRef">Protoplasma, 2017, 254 (2), pp.791-801. &amp;#x27E8;10.1007/s00709-016-0993-8&amp;#x27E9;</idno>
            <availability status="restricted"/>
          </publicationStmt>
          <seriesStmt>
            <idno type="stamp" n="UNIV-PARIS7" corresp="UNIV-PARIS">Université Denis Diderot - Paris VII</idno>
            <idno type="stamp" n="CNRS">CNRS - Centre national de la recherche scientifique</idno>
            <idno type="stamp" n="UNIV-EVRY">Université d'Evry-Val d'Essonne</idno>
            <idno type="stamp" n="UNIV-PSUD">Université Paris Sud - Paris XI</idno>
            <idno type="stamp" n="INRA">INRA - Institut national de la recherche agronomique</idno>
            <idno type="stamp" n="USPC">Université Sorbonne Paris Cité</idno>
            <idno type="stamp" n="IPS2" corresp="UNIV-EVRY">Institut des Sciences des Plantes de Paris Saclay</idno>
            <idno type="stamp" n="UNIV-PARIS-SACLAY">Université Paris-Saclay</idno>
            <idno type="stamp" n="AGREENIUM">Archive ouverte en agrobiosciences</idno>
            <idno type="stamp" n="UNIV-PSUD-SACLAY" corresp="UNIV-PARIS-SACLAY">Université Paris Sud pour Paris Saclay</idno>
            <idno type="stamp" n="UNIV-EVRY-SACLAY" corresp="UNIV-PARIS-SACLAY">UNIV-EVRY-SACLAY</idno>
            <idno type="stamp" n="INRA-SACLAY" corresp="UNIV-PARIS-SACLAY">INRA-SACLAY</idno>
            <idno type="stamp" n="INRAE">Institut National de Recherche en Agriculture, Alimentation et Environnement</idno>
            <idno type="stamp" n="UNIV-PARIS">Université Paris Cité</idno>
            <idno type="stamp" n="UP-SCIENCES">Université Paris Cité - Faculté des Sciences</idno>
            <idno type="stamp" n="RESEAU-TELEDETECTION-INRAE">Réseau télédétection INRAE </idno>
            <idno type="stamp" n="BIOLOGIE_ET_AMELIORATION_DES_PLANTES">Département BAP INRAE</idno>
          </seriesStmt>
          <notesStmt>
            <note type="audience" n="1">Not set</note>
            <note type="popular" n="0">No</note>
            <note type="peer" n="1">Yes</note>
          </notesStmt>
          <sourceDesc>
            <biblStruct>
              <analytic>
                <title xml:lang="en">Evolutionary dynamics of satellite DNA repeats from Phaseolus beans</title>
                <author role="aut">
                  <persName>
                    <forename type="first">Tiago</forename>
                    <surname>Ribeiro</surname>
                  </persName>
                  <idno type="halauthorid">1241134-0</idno>
                  <affiliation ref="#struct-516273"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Karla G. B.</forename>
                    <surname>dos Santos</surname>
                  </persName>
                  <idno type="halauthorid">1241135-0</idno>
                  <affiliation ref="#struct-516273"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Manon</forename>
                    <surname>Richard</surname>
                  </persName>
                  <idno type="idhal" notation="numeric">1176965</idno>
                  <idno type="halauthorid" notation="string">1050072-1176965</idno>
                  <idno type="ORCID">https://orcid.org/0000-0002-7903-024X</idno>
                  <idno type="IDREF">https://www.idref.fr/183995899</idno>
                  <idno type="VIAF">https://viaf.org/viaf/314929922</idno>
                  <affiliation ref="#struct-521154"/>
                  <affiliation ref="#struct-303171"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Mireille</forename>
                    <surname>Sévignac</surname>
                  </persName>
                  <idno type="halauthorid">1241136-0</idno>
                  <affiliation ref="#struct-521154"/>
                  <affiliation ref="#struct-300301"/>
                  <affiliation ref="#struct-303171"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Vincent</forename>
                    <surname>Thareau</surname>
                  </persName>
                  <email type="md5">5c6c25a2762be6bb76d8acbef8c11514</email>
                  <email type="domain">gmail.com</email>
                  <idno type="idhal" notation="numeric">1513117</idno>
                  <idno type="halauthorid" notation="string">235024-1513117</idno>
                  <affiliation ref="#struct-521154"/>
                  <affiliation ref="#struct-303171"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Valérie</forename>
                    <surname>Geffroy</surname>
                  </persName>
                  <email type="md5">bf74b475c9e8f8cfa86c1b32f11fe57b</email>
                  <email type="domain">u-psud.fr</email>
                  <idno type="idhal" notation="string">valerie-geffroy</idno>
                  <idno type="idhal" notation="numeric">748501</idno>
                  <idno type="halauthorid" notation="string">1241137-748501</idno>
                  <idno type="ORCID">https://orcid.org/0000-0003-2210-3636</idno>
                  <idno type="IDREF">https://www.idref.fr/123981182</idno>
                  <idno type="VIAF">https://viaf.org/viaf/217381323</idno>
                  <idno type="ISNI">http://isni.org/isni/0000000359244707</idno>
                  <affiliation ref="#struct-521154"/>
                  <affiliation ref="#struct-303171"/>
                </author>
                <author role="crp">
                  <persName>
                    <forename type="first">Andrea</forename>
                    <surname>Pedrosa-Harand</surname>
                  </persName>
                  <email type="md5">21bb125b7ec2628079aba3713acc1a20</email>
                  <email type="domain">pesquisador.cnpq.br</email>
                  <idno type="idhal" notation="numeric">1019469</idno>
                  <idno type="halauthorid" notation="string">1241138-1019469</idno>
                  <affiliation ref="#struct-516273"/>
                </author>
              </analytic>
              <monogr>
                <idno type="halJournalId" status="VALID">18309</idno>
                <idno type="issn">0033-183X</idno>
                <idno type="eissn">1615-6102</idno>
                <title level="j">Protoplasma</title>
                <imprint>
                  <publisher>Springer Verlag</publisher>
                  <biblScope unit="volume">254</biblScope>
                  <biblScope unit="issue">2</biblScope>
                  <biblScope unit="pp">791-801</biblScope>
                  <date type="datePub">2017</date>
                </imprint>
              </monogr>
              <idno type="doi">10.1007/s00709-016-0993-8</idno>
              <idno type="prodinra">392729</idno>
              <idno type="pubmed">27335007</idno>
              <idno type="wos">000394361400017</idno>
              <ref target="https://archives-publications.inrae.fr/392729.pdf" type="seeAlso"/>
            </biblStruct>
          </sourceDesc>
          <profileDesc>
            <langUsage>
              <language ident="en">English</language>
            </langUsage>
            <textClass>
              <keywords scheme="author">
                <term xml:lang="en">Satellite DNA</term>
                <term xml:lang="en">Differential amplification</term>
                <term xml:lang="en">5S rRNA</term>
                <term xml:lang="en">Subtelomeres</term>
                <term xml:lang="en">Pericentromeres</term>
                <term xml:lang="en">Phaseolus</term>
                <term xml:lang="en">RDNA</term>
              </keywords>
              <classCode scheme="halDomain" n="sdv">Life Sciences [q-bio]</classCode>
              <classCode scheme="halTypology" n="ART">Journal articles</classCode>
              <classCode scheme="halOldTypology" n="ART">Journal articles</classCode>
              <classCode scheme="halTreeTypology" n="ART">Journal articles</classCode>
            </textClass>
            <abstract xml:lang="en">
              <p>Common bean (Phaseolus vulgaris) subtelomeres are highly enriched for khipu, the main satellite DNA identified so far in this genome. Here, we comparatively investigate khipu genomic organization in Phaseolus species from different clades. Additionally, we identified and characterized another satellite repeat, named jumper, associated to khipu. A mixture of P. vulgaris khipu clones hybridized in situ confirmed the presence of khipu-like sequences on subterminal chromosome regions in all Phaseolus species, with differences in the number and intensity of signals between species and when species-specific clones were used. Khipu is present as multimers of similar to 500 bp and sequence analyses of cloned fragments revealed close relationship among khipu repeats. The new repeat, named jumper, is a 170-bp satellite sequence present in all Phaseolus species and inserted into the nontranscribed spacer (NTS) of the 5S rDNA in the P. vulgaris genome. Nevertheless, jumper was found as a high-copy repeat at subtelomeres and/or pericentromeres in the Phaseolus microcarpus lineage only. Our data argue for khipu as an important subtelomeric satellite DNA in the genus and for a complex satellite repeat composition of P. microcarpus subtelomeres, which also contain jumper. Furthermore, the differential amplification of these repeats in subtelomeres or pericentromeres reinforces the presence of a dynamic satellite DNA library in Phaseolus.</p>
            </abstract>
          </profileDesc>
        </biblFull>
      </listBibl>
    </body>
    <back>
      <listOrg type="structures">
        <org type="laboratory" xml:id="struct-516273" status="INCOMING">
          <orgName>Departamento de Botânica, Laboratório de Citogenética e Evolução Vegetal</orgName>
          <desc>
            <address>
              <country key="BR"/>
            </address>
          </desc>
          <listRelation>
            <relation active="#struct-300705" type="direct"/>
          </listRelation>
        </org>
        <org type="laboratory" xml:id="struct-521154" status="OLD">
          <idno type="IdRef">188412107</idno>
          <idno type="RNSR">201521301T</idno>
          <orgName>Institut des Sciences des Plantes de Paris-Saclay</orgName>
          <orgName type="acronym">IPS2 (UMR_9213 / UMR_1403)</orgName>
          <date type="start">2015-01-01</date>
          <date type="end">2019-12-31</date>
          <desc>
            <address>
              <addrLine>Institute of Plant Sciences - Paris-SaclayBâtiment 630, rue de NoetzlinPlateau du MoulonCS8000491192 - Gif-sur-Yvette Cedex</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">http://www.ips2.u-psud.fr/</ref>
          </desc>
          <listRelation>
            <relation name="UMR_1403" active="#struct-92114" type="direct"/>
            <relation active="#struct-92966" type="direct"/>
            <relation active="#struct-300301" type="direct"/>
            <relation active="#struct-300306" type="direct"/>
            <relation name="UMR9213" active="#struct-441569" type="direct"/>
          </listRelation>
        </org>
        <org type="regroupinstitution" xml:id="struct-303171" status="VALID">
          <idno type="IdRef">19077990X</idno>
          <idno type="ROR">https://ror.org/001z21q04</idno>
          <orgName>Université Sorbonne Paris Cité</orgName>
          <orgName type="acronym">USPC</orgName>
          <date type="start">2010-01-01</date>
          <desc>
            <address>
              <addrLine>Université Sorbonne Paris Cité | 100-104, avenue de France | 75013 Paris</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">http://www.sorbonne-paris-cite.fr/fr</ref>
          </desc>
        </org>
        <org type="institution" xml:id="struct-300301" status="OLD">
          <idno type="IdRef">027542084</idno>
          <idno type="ISNI">0000000121514068</idno>
          <idno type="ROR">https://ror.org/02n7qrg46</idno>
          <orgName>Université Paris Diderot - Paris 7</orgName>
          <orgName type="acronym">UPD7</orgName>
          <date type="end">2019-12-31</date>
          <desc>
            <address>
              <addrLine>5 rue Thomas-Mann - 75205 Paris cedex 13</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">http://www.univ-paris-diderot.fr</ref>
          </desc>
        </org>
        <org type="institution" xml:id="struct-300705" status="VALID">
          <idno type="ROR">https://ror.org/047908t24</idno>
          <orgName>Universidade Federal de Pernambuco [Recife]</orgName>
          <orgName type="acronym">UFPE</orgName>
          <desc>
            <address>
              <addrLine>Av. Prof. Moraes Rego, 1235 - Cidade Universitária, Recife</addrLine>
              <country key="BR"/>
            </address>
            <ref type="url">https://www.ufpe.br/</ref>
          </desc>
        </org>
        <org type="institution" xml:id="struct-92114" status="OLD">
          <idno type="ROR">https://ror.org/01x3gbx83</idno>
          <orgName>Institut National de la Recherche Agronomique</orgName>
          <orgName type="acronym">INRA</orgName>
          <date type="start">1946-05-18</date>
          <date type="end">2019-12-31</date>
          <desc>
            <address>
              <country key="FR"/>
            </address>
            <ref type="url">http://www.inra.fr</ref>
          </desc>
        </org>
        <org type="institution" xml:id="struct-92966" status="OLD">
          <idno type="ROR">https://ror.org/028rypz17</idno>
          <orgName>Université Paris-Sud - Paris 11</orgName>
          <orgName type="acronym">UP11</orgName>
          <date type="end">2019-12-31</date>
          <desc>
            <address>
              <addrLine>Bâtiment 300 - 91405 Orsay cedex</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">http://www.u-psud.fr/</ref>
          </desc>
        </org>
        <org type="institution" xml:id="struct-300306" status="VALID">
          <idno type="IdRef">030820529</idno>
          <idno type="ISNI">0000000121805818</idno>
          <idno type="ROR">https://ror.org/00e96v939</idno>
          <idno type="Wikidata">Q1531014</idno>
          <orgName>Université d'Évry-Val-d'Essonne</orgName>
          <orgName type="acronym">UEVE</orgName>
          <date type="start">1991-07-22</date>
          <desc>
            <address>
              <addrLine>Boulevard François Mitterrand 91025 Evry Cedex</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">http://www.univ-evry.fr</ref>
          </desc>
        </org>
        <org type="regroupinstitution" xml:id="struct-441569" status="VALID">
          <idno type="IdRef">02636817X</idno>
          <idno type="ISNI">0000000122597504</idno>
          <idno type="ROR">https://ror.org/02feahw73</idno>
          <orgName>Centre National de la Recherche Scientifique</orgName>
          <orgName type="acronym">CNRS</orgName>
          <date type="start">1939-10-19</date>
          <desc>
            <address>
              <country key="FR"/>
            </address>
            <ref type="url">https://www.cnrs.fr/</ref>
          </desc>
        </org>
      </listOrg>
    </back>
  </text>
</TEI>