Tools and data services registry: a community effort to document bioinformatics resources.
Jon Ison
(1)
,
Kristoffer Rapacki
(1)
,
Hervé Ménager
(2)
,
Matúš Kalaš
(3)
,
Emil Rydza
(1)
,
Piotr Chmura
(1)
,
Christian Anthon
(4)
,
Niall Beard
(5)
,
Karel Berka
(6)
,
Dan Bolser
(7)
,
Tim Booth
(8)
,
Anthony Bretaudeau
(9)
,
Jan Brezovsky
(10)
,
Rita Casadio
(11)
,
Gianni Cesareni
(12)
,
Frederik Coppens
(13, 14)
,
Michael Cornell
(5)
,
Gianmauro Cuccuru
(15)
,
Kristian Davidsen
(1)
,
Gianluca Della Vedova
(16)
,
Tunca Dogan
(7)
,
Olivia Doppelt-Azeroual
(2)
,
Laura Emery
(7)
,
Elisabeth Gasteiger
(17)
,
Thomas Gatter
(18)
,
Tatyana Goldberg
(19)
,
Marie Grosjean
(20)
,
Björn Grüning
(21)
,
Manuela Helmer-Citterich
(12)
,
Hans Ienasescu
(4)
,
Vassilios Ioannidis
(17)
,
Martin Closter Jespersen
(1)
,
Rafael Jimenez
(7)
,
Nick Juty
(7)
,
Peter Juvan
(22)
,
Maximilian Koch
(7)
,
Camille Laibe
(7)
,
Jing-Woei Li
(23)
,
Luana Licata
(12)
,
Fabien Mareuil
(2)
,
Ivan Mičetić
(24)
,
Rune Møllegaard Friborg
(25)
,
Sebastien Moretti
(17, 26)
,
Chris Morris
(27)
,
Steffen Möller
(28, 29)
,
Aleksandra Nenadic
(5)
,
Hedi Peterson
(30)
,
Giuseppe Profiti
(11)
,
Peter Rice
(31)
,
Paolo Romano
(32)
,
Paola Roncaglia
(7)
,
Rabie Saidi
(7)
,
Andrea Schafferhans
(19)
,
Veit Schwämmle
(33)
,
Callum Smith
(34)
,
Maria Maddalena Sperotto
(1)
,
Heinz Stockinger
(17)
,
Radka Svobodová Vařeková
(35)
,
Silvio C E Tosatto
(24)
,
Victor de La Torre
(36)
,
Paolo Uva
(15)
,
Allegra Via
(37)
,
Guy Yachdav
(19)
,
Federico Zambelli
(38, 39)
,
Gert Vriend
(40)
,
Burkhard Rost
(19)
,
Helen Parkinson
(7)
,
Peter Løngreen
(1)
,
Søren Brunak
(1, 4)
1
DTU -
Danmarks Tekniske Universitet = Technical University of Denmark
2 Institut Pasteur de Madagascar
3 UiB - University of Bergen
4 UCPH - University of Copenhagen = Københavns Universitet
5 University of Manchester [Manchester]
6 Palacky University Olomouc
7 European Bioinformatics Institute
8 NEBC Wallingford
9 IGEPP - Institut de Génétique, Environnement et Protection des Plantes
10 MUNI - Masaryk University [Brno]
11 UNIBO - Alma Mater Studiorum Università di Bologna = University of Bologna
12 Università degli Studi di Roma Tor Vergata [Roma, Italia] = University of Rome Tor Vergata [Rome, Italy] = Université de Rome Tor Vergata [Rome, Italie]
13 UGENT - Universiteit Gent = Ghent University = Université de Gand
14 Flanders Institute for Biotechnology
15 CRS4 Bioinformat
16 UNIMIB - Università degli Studi di Milano-Bicocca = University of Milano-Bicocca
17 SIB - Swiss Institute of Bioinformatics [Lausanne]
18 Universität Bielefeld = Bielefeld University
19 Tumor Biology Center
20 CNRS - Centre National de la Recherche Scientifique
21 University of Freiburg
22 University of Ljubljana
23 CUHK - The Chinese University of Hong Kong [Hong Kong]
24 Unipd - Università degli Studi di Padova = University of Padua
25 Bioinformatics Research Centre
26 UNIL - Université de Lausanne = University of Lausanne
27 CCLRC Daresbury Laboratory
28 Universität zu Lübeck = University of Lübeck [Lübeck]
29 Universität Rostock
30 University of Tartu
31 Imperial College London
32 IRCCS AOU San Martino - IRCCS Azienda Ospedaliera Universitaria Integrata San Martino
33 SDU - University of Southern Denmark
34 WTCHG
35 CEITEC MU - Central European Institute of Technology [Brno]
36 Instituto Nacional de Bioinformática
37 UNIROMA - Università degli Studi di Roma "La Sapienza" = Sapienza University [Rome]
38 Consiglio Nazionale delle Ricerche
39 UNIMI - Università degli Studi di Milano = University of Milan
40 Radboud University [Nijmegen]
2 Institut Pasteur de Madagascar
3 UiB - University of Bergen
4 UCPH - University of Copenhagen = Københavns Universitet
5 University of Manchester [Manchester]
6 Palacky University Olomouc
7 European Bioinformatics Institute
8 NEBC Wallingford
9 IGEPP - Institut de Génétique, Environnement et Protection des Plantes
10 MUNI - Masaryk University [Brno]
11 UNIBO - Alma Mater Studiorum Università di Bologna = University of Bologna
12 Università degli Studi di Roma Tor Vergata [Roma, Italia] = University of Rome Tor Vergata [Rome, Italy] = Université de Rome Tor Vergata [Rome, Italie]
13 UGENT - Universiteit Gent = Ghent University = Université de Gand
14 Flanders Institute for Biotechnology
15 CRS4 Bioinformat
16 UNIMIB - Università degli Studi di Milano-Bicocca = University of Milano-Bicocca
17 SIB - Swiss Institute of Bioinformatics [Lausanne]
18 Universität Bielefeld = Bielefeld University
19 Tumor Biology Center
20 CNRS - Centre National de la Recherche Scientifique
21 University of Freiburg
22 University of Ljubljana
23 CUHK - The Chinese University of Hong Kong [Hong Kong]
24 Unipd - Università degli Studi di Padova = University of Padua
25 Bioinformatics Research Centre
26 UNIL - Université de Lausanne = University of Lausanne
27 CCLRC Daresbury Laboratory
28 Universität zu Lübeck = University of Lübeck [Lübeck]
29 Universität Rostock
30 University of Tartu
31 Imperial College London
32 IRCCS AOU San Martino - IRCCS Azienda Ospedaliera Universitaria Integrata San Martino
33 SDU - University of Southern Denmark
34 WTCHG
35 CEITEC MU - Central European Institute of Technology [Brno]
36 Instituto Nacional de Bioinformática
37 UNIROMA - Università degli Studi di Roma "La Sapienza" = Sapienza University [Rome]
38 Consiglio Nazionale delle Ricerche
39 UNIMI - Università degli Studi di Milano = University of Milan
40 Radboud University [Nijmegen]
Jon Ison
- Fonction : Auteur
- PersonId : 784031
- ORCID : 0000-0001-6666-1520
- IdRef : 171851056
Hervé Ménager
- Fonction : Auteur
- PersonId : 184612
- IdHAL : herve-menager
- ORCID : 0000-0002-7552-1009
- IdRef : 120930595
Anthony Bretaudeau
- Fonction : Auteur
- PersonId : 1688
- IdHAL : anthony-bretaudeau
- ORCID : 0000-0003-0914-2470
- IdRef : 253128358
Frederik Coppens
- Fonction : Auteur
- PersonId : 784033
- ORCID : 0000-0001-6565-5145
Björn Grüning
- Fonction : Auteur
- PersonId : 784034
- ORCID : 0000-0002-3079-6586
Luana Licata
- Fonction : Auteur
- PersonId : 784035
- ORCID : 0000-0001-5084-9000
Fabien Mareuil
- Fonction : Auteur
- PersonId : 184846
- IdHAL : fabien-mareuil
- ORCID : 0000-0002-3832-9157
- IdRef : 132420155
Paolo Romano
- Fonction : Auteur
- PersonId : 772130
- ORCID : 0000-0001-7066-6674
Résumé
Life sciences are yielding huge data sets that underpin scientific discoveries fundamental to improvement in human health, agriculture and the environment. In support of these discoveries, a plethora of databases and tools are deployed, in technically complex and diverse implementations, across a spectrum of scientific disciplines. The corpus of documentation of these resources is fragmented across the Web, with much redundancy, and has lacked a common standard of information. The outcome is that scientists must often struggle to find, understand, compare and use the best resources for the task at hand.Here we present a community-driven curation effort, supported by ELIXIR-the European infrastructure for biological information-that aspires to a comprehensive and consistent registry of information about bioinformatics resources. The sustainable upkeep of this Tools and Data Services Registry is assured by a curation effort driven by and tailored to local needs, and shared amongst a network of engaged partners.As of November 2015, the registry includes 1785 resources, with depositions from 126 individual registrations including 52 institutional providers and 74 individuals. With community support, the registry can become a standard for dissemination of information about bioinformatics resources: we welcome everyone to join us in this common endeavour. The registry is freely available at https://bio.tools.
Domaines
Sciences du Vivant [q-bio]
Fichier principal
gkv1116_{1AC5472F-C5B5-489F-AF5F-3F09C815FCE8}.pdf (748.98 Ko)
Télécharger le fichier
| Origine | Accord explicite pour ce dépôt |
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