Corrigendum: The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons
Ingo Braasch
(1, 2)
,
Andrew R. Gehrke
(3)
,
Jeramiah J. Smith
(4)
,
Kazuhiko Kawasaki
(5, 6)
,
Tereza Manousaki
(7)
,
Jérémy Pasquier
(8)
,
Angel Amores
(1)
,
Thomas Desvignes
(1)
,
Peter Batzel
(1)
,
Julian Catchen
(9)
,
Aaron M. Berlin
(10)
,
Michael S. Campbell
(11, 12)
,
Daniel Barrell
(13, 14, 15)
,
Kyle J. Martin
(16, 17)
,
John F. Mulley
(18)
,
Vydianathan Ravi
(19)
,
Alison P. Lee
(19)
,
Tetsuya Nakamura
(3)
,
Domitille Chalopin
(20, 21)
,
Shaohua Fan
(4, 21)
,
Dustin Wcisel
(22, 23)
,
Cristian Cañestro
(24, 25)
,
Jason Sydes
(1)
,
Felix E.G. Beaudry
(26)
,
Yi Sun
(27, 28)
,
Jana Hertel
(29, 30)
,
Michael J. Beam
(1)
,
Mario Fasold
(29)
,
Mikio Ishiyama
(31)
,
Jeremy Johnson
(10)
,
Steffi Kehr
(29)
,
Marcia Lara
(10)
,
John H. Letaw
(1)
,
Gary W. Litman
(32)
,
Ronda T. Litman
(32)
,
Masato Mikami
(33)
,
Tatsuya Ota
(34)
,
Nil Ratan Saha
(35)
,
Louise Williams
(10)
,
Peter F. Stadler
(29)
,
Han Wang
(27, 28)
,
John S. Taylor
(26)
,
Quenton Fontenot
(36)
,
Allyse Ferrara
(36)
,
Stephen M.J. Searle
(13)
,
Bronwen Aken
(13, 37)
,
Mark Yandell
(11)
,
Igor Schneider
(38)
,
Jeffrey A Yoder
(39, 23)
,
Jean-Nicolas Volff
(20)
,
Axel Meyer
(4, 40)
,
Chris T Amemiya
(35)
,
Byrappa Venkatesh
(19)
,
Peter W.H. Holland
(16)
,
Yann Guiguen
(8)
,
Julien Bobe
(8)
,
Neil H. Shubin
(3)
,
Federica Di Palma
(10, 41)
,
Jessica Alföldi
(10)
,
Kerstin Lindblad-Toh
(10, 42)
,
John H. Postlethwait
(1)
1
Institute of Neuroscience
2 IB - Department of Integrative Biology [Berkeley]
3 Department of Organismal Biology and Anatomy
4 Department of Biology
5 Department of Anthropology
6 Penn State - Pennsylvania State University
7 HCMR - Hellenic Centre for Marine Research
8 LPGP - Laboratoire de Physiologie et Génomique des Poissons
9 Department of Animal Biology
10 BROAD INSTITUTE - Broad Institute of MIT and Harvard
11 Eccles Institute of Human Genetics
12 Cold Spring Harbor
13 Wellcome Trust Genome Campus
14 EMBL-EBI - European Bioinformatics Institute [Hinxton]
15 The Wellcome Trust Sanger Institute [Cambridge]
16 Department of Zoology
17 Department of Animal and Plant Sciences [Sheffield]
18 School of Biological Sciences [Bangor]
19 A*STAR - Agency for science, technology and research [Singapore]
20 IGFL - Institut de Génomique Fonctionnelle de Lyon
21 Department of Genetics
22 Department of Molecular Biomedical Sciences Raleigh
23 Center for Comparative Medicine and Translational Research
24 Departament de Genètica
25 Institut de Recerca de la Biodiversitat
26 Department of Biology
27 Center for Circadian Clocks
28 School of Biology and Basic Medical Sciences, Medical College
29 Bioinformatics Group, Department of Computer Science
30 Young Investigators Group Bioinformatics and Transcriptomics, Department of Proteomics
31 Department of Dental Hygiene
32 Morsani College of Medicine, Department of Pediatrics
33 Department of Microbiology
34 SOKENDAI - Graduate University for Advanced Studies [Hayama]
35 Molecular Genetics Program
36 Department of Biological Sciences
37 European Molecular Biology Laboratory, Wellcome Trust Genome Campus
38 Instituto de Ciências Biológicas
39 Department of Molecular Biomedical Sciences
40 IMPRS - International Max Planck Research School for Organismal Biology
41 Genome Analysis Center
42 Science for Life Laboratory, Department of Medical Biochemistry and Microbiology
2 IB - Department of Integrative Biology [Berkeley]
3 Department of Organismal Biology and Anatomy
4 Department of Biology
5 Department of Anthropology
6 Penn State - Pennsylvania State University
7 HCMR - Hellenic Centre for Marine Research
8 LPGP - Laboratoire de Physiologie et Génomique des Poissons
9 Department of Animal Biology
10 BROAD INSTITUTE - Broad Institute of MIT and Harvard
11 Eccles Institute of Human Genetics
12 Cold Spring Harbor
13 Wellcome Trust Genome Campus
14 EMBL-EBI - European Bioinformatics Institute [Hinxton]
15 The Wellcome Trust Sanger Institute [Cambridge]
16 Department of Zoology
17 Department of Animal and Plant Sciences [Sheffield]
18 School of Biological Sciences [Bangor]
19 A*STAR - Agency for science, technology and research [Singapore]
20 IGFL - Institut de Génomique Fonctionnelle de Lyon
21 Department of Genetics
22 Department of Molecular Biomedical Sciences Raleigh
23 Center for Comparative Medicine and Translational Research
24 Departament de Genètica
25 Institut de Recerca de la Biodiversitat
26 Department of Biology
27 Center for Circadian Clocks
28 School of Biology and Basic Medical Sciences, Medical College
29 Bioinformatics Group, Department of Computer Science
30 Young Investigators Group Bioinformatics and Transcriptomics, Department of Proteomics
31 Department of Dental Hygiene
32 Morsani College of Medicine, Department of Pediatrics
33 Department of Microbiology
34 SOKENDAI - Graduate University for Advanced Studies [Hayama]
35 Molecular Genetics Program
36 Department of Biological Sciences
37 European Molecular Biology Laboratory, Wellcome Trust Genome Campus
38 Instituto de Ciências Biológicas
39 Department of Molecular Biomedical Sciences
40 IMPRS - International Max Planck Research School for Organismal Biology
41 Genome Analysis Center
42 Science for Life Laboratory, Department of Medical Biochemistry and Microbiology
Ingo Braasch
- Fonction : Auteur
- PersonId : 1017552
Kazuhiko Kawasaki
- Fonction : Auteur
- PersonId : 784022
- ORCID : 0000-0003-1090-5340
Tereza Manousaki
- Fonction : Auteur
- PersonId : 784023
- ORCID : 0000-0001-7518-0542
Jérémy Pasquier
- Fonction : Auteur
- PersonId : 955496
Tatsuya Ota
- Fonction : Auteur
- PersonId : 784024
- ORCID : 0000-0002-1115-5169
Yann Guiguen
- Fonction : Auteur
- PersonId : 739883
- IdHAL : yann-guiguen
- ORCID : 0000-0001-5464-6219
- IdRef : 094996423
Julien Bobe
- Fonction : Auteur
- PersonId : 739882
- IdHAL : julien-bobe
- ORCID : 0000-0002-9355-8227
- IdRef : 111700884
Résumé
As we intended, other researchers have been able to use the draft spotted gar genome sequence available from the Broad Institute website since December 2011, the assembly LepOcu1 publicly available from NCBI since 13 January 2012 under accession code GCA000242695.1, and the Ensembl gene annotation (version 74, December 2013; http://www.ensembl.org/Lepisosteus_oculatus/Info/Annotation) and recent annotation by NCBI on 15 May 2014 guided by RNA sequence data from ten tissues. While this article was in review, a paper (Nature 526, 108–111, 2015) was published that arrives at conclusions similar to some of our own analyses, and we wish to acknowledge that publication, which used our unpublished data and genome annotations, emphasizing the importance of the strategy of early release of sequence data. The correction has been made to the HTML and PDF versions of the article.
Mots clés
miRNA
lepisosteus oculatus
lépisosté tacheté
teleosteen
poisson
homme
duplication des génomes
expression des gènes
évolution du génome
séquence régulatrice
physiologie animale
analyse génomique
analyse du transcriptome
chromosome
analyse phylogénétique
fonction des gènes
vertébré
immunité
reproduction
interaction animal homme