<?xml version="1.0" encoding="utf-8"?>
<TEI xmlns="http://www.tei-c.org/ns/1.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:hal="http://hal.archives-ouvertes.fr/" xmlns:gml="http://www.opengis.net/gml/3.3/" xmlns:gmlce="http://www.opengis.net/gml/3.3/ce" version="1.1" xsi:schemaLocation="http://www.tei-c.org/ns/1.0 http://api.archives-ouvertes.fr/documents/aofr-sword.xsd">
  <teiHeader>
    <fileDesc>
      <titleStmt>
        <title>HAL TEI export of hal-01455975</title>
      </titleStmt>
      <publicationStmt>
        <distributor>CCSD</distributor>
        <availability status="restricted">
          <licence target="https://creativecommons.org/publicdomain/zero/1.0/">CC0 1.0 - Universal</licence>
        </availability>
        <date when="2026-05-03T21:06:41+02:00"/>
      </publicationStmt>
      <sourceDesc>
        <p part="N">HAL API Platform</p>
      </sourceDesc>
    </fileDesc>
  </teiHeader>
  <text>
    <body>
      <listBibl>
        <biblFull>
          <titleStmt>
            <title xml:lang="en">Terroir is a key driver of seed-associated microbial assemblages</title>
            <author role="aut">
              <persName>
                <forename type="first">Stéphanie</forename>
                <surname>Klaedtke</surname>
              </persName>
              <idno type="halauthorid">1124273-0</idno>
              <orgName ref="#struct-108028"/>
              <affiliation ref="#struct-190320"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Marie Agnes</forename>
                <surname>Jacques</surname>
              </persName>
              <email type="md5">f8fc34d8bd5c2b3b85ac66fbd0562e9d</email>
              <email type="domain">inrae.fr</email>
              <idno type="idhal" notation="string">marie-agnes-jacques</idno>
              <idno type="idhal" notation="numeric">747798</idno>
              <idno type="halauthorid" notation="string">952221-747798</idno>
              <idno type="ORCID">https://orcid.org/0000-0002-1442-917X</idno>
              <orgName ref="#struct-577435"/>
              <affiliation ref="#struct-190315"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Lorenzo</forename>
                <surname>Raggi</surname>
              </persName>
              <idno type="halauthorid">952570-0</idno>
              <affiliation ref="#struct-482868"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Anne</forename>
                <surname>Preveaux</surname>
              </persName>
              <email type="md5">84e387b9dee4978e3876aaa04ac90c94</email>
              <email type="domain">inrae.fr</email>
              <idno type="idhal" notation="numeric">1202744</idno>
              <idno type="halauthorid" notation="string">2020955-1202744</idno>
              <orgName ref="#struct-577435"/>
              <affiliation ref="#struct-190315"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Sophie</forename>
                <surname>Bonneau</surname>
              </persName>
              <email type="md5">585c2f07f7a59bae428d6564eaedc031</email>
              <email type="domain">inrae.fr</email>
              <idno type="idhal" notation="numeric">1202745</idno>
              <idno type="halauthorid" notation="string">913251-1202745</idno>
              <affiliation ref="#struct-190315"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Valeria</forename>
                <surname>Negri</surname>
              </persName>
              <idno type="halauthorid">751394-0</idno>
              <affiliation ref="#struct-482868"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Véronique</forename>
                <surname>Chable</surname>
              </persName>
              <idno type="halauthorid">695960-0</idno>
              <affiliation ref="#struct-190320"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Matthieu</forename>
                <surname>Barret</surname>
              </persName>
              <email type="md5">c97a09fc070e44f9bdfc808bb88676f1</email>
              <email type="domain">inrae.fr</email>
              <idno type="idhal" notation="string">matthieu-barret</idno>
              <idno type="idhal" notation="numeric">745026</idno>
              <idno type="halauthorid" notation="string">50741-745026</idno>
              <idno type="ORCID">https://orcid.org/0000-0002-7633-8476</idno>
              <idno type="GOOGLE SCHOLAR">https://scholar.google.fr/citations?user=bBaMYNwAAAAJ</idno>
              <idno type="IDREF">https://www.idref.fr/136763251</idno>
              <orgName ref="#struct-577435"/>
              <affiliation ref="#struct-190315"/>
            </author>
            <editor role="depositor">
              <persName>
                <forename>Marie-Agnès</forename>
                <surname>Jacques</surname>
              </persName>
              <email type="md5">f8fc34d8bd5c2b3b85ac66fbd0562e9d</email>
              <email type="domain">inrae.fr</email>
            </editor>
            <funder>Grants awarded by the Region des Pays de la Loire (Qualisem, metaSEED, 2013 10080)</funder>
          </titleStmt>
          <editionStmt>
            <edition n="v1" type="current">
              <date type="whenSubmitted">2023-12-09 17:38:39</date>
              <date type="whenModified">2025-03-27 12:08:07</date>
              <date type="whenReleased">2023-12-12 15:06:26</date>
              <date type="whenProduced">2016</date>
              <date type="whenEndEmbargoed">2023-12-09</date>
              <ref type="file" target="https://hal.science/hal-01455975v1/document">
                <date notBefore="2023-12-09"/>
              </ref>
              <ref type="file" subtype="greenPublisher" n="1" target="https://hal.science/hal-01455975v1/file/10.1111_1462-2920.12977_self-archive.pdf" id="file-4333267-3775208">
                <date notBefore="2023-12-09"/>
              </ref>
              <ref type="externalLink" target="https://orbi.uliege.be/bitstream/2268/187389/1/10.1111_1462-2920.12977_self-archive.pdf"/>
              <fs>
                <f name="inra_etatDocument_local" notation="string" n="VE">
                  <string>inra_etatDocument_local_VE</string>
                </f>
                <f name="inra_publicVise_local" notation="string" n="SC">
                  <string>inra_publicVise_local_SC</string>
                </f>
                <f name="inra_titreSpecial_local" notation="string" n="Microbial communities">
                  <string>Microbial communities</string>
                </f>
              </fs>
            </edition>
            <respStmt>
              <resp>contributor</resp>
              <name key="609969">
                <persName>
                  <forename>Marie-Agnès</forename>
                  <surname>Jacques</surname>
                </persName>
                <email type="md5">f8fc34d8bd5c2b3b85ac66fbd0562e9d</email>
                <email type="domain">inrae.fr</email>
              </name>
            </respStmt>
          </editionStmt>
          <publicationStmt>
            <distributor>CCSD</distributor>
            <idno type="halId">hal-01455975</idno>
            <idno type="halUri">https://hal.science/hal-01455975</idno>
            <idno type="halBibtex">klaedtke:hal-01455975</idno>
            <idno type="halRefHtml">&lt;i&gt;Environmental Microbiology&lt;/i&gt;, 2016, 18 (6), pp.1792-1804. &lt;a target="_blank" href="https://dx.doi.org/10.1111/1462-2920.12977"&gt;&amp;#x27E8;10.1111/1462-2920.12977&amp;#x27E9;&lt;/a&gt;</idno>
            <idno type="halRef">Environmental Microbiology, 2016, 18 (6), pp.1792-1804. &amp;#x27E8;10.1111/1462-2920.12977&amp;#x27E9;</idno>
            <availability status="restricted">
              <licence target="https://about.hal.science/hal-authorisation-v1/">HAL Authorization<ref corresp="#file-4333267-3775208"/></licence>
            </availability>
          </publicationStmt>
          <seriesStmt>
            <idno type="stamp" n="SDE">Sciences De l'Environnement</idno>
            <idno type="stamp" n="UNIV-ANGERS">Université d'Angers</idno>
            <idno type="stamp" n="INRA">INRA - Institut national de la recherche agronomique</idno>
            <idno type="stamp" n="GIP-BE">GIP Bretagne Environnement</idno>
            <idno type="stamp" n="UNAM">l'unam - université nantes angers le mans</idno>
            <idno type="stamp" n="AGREENIUM">Archive ouverte en agrobiosciences</idno>
            <idno type="stamp" n="IRHS" corresp="UNIV-ANGERS">Institut de Recherche en Horticulture et Semences</idno>
            <idno type="stamp" n="INRAE">Institut National de Recherche en Agriculture, Alimentation et Environnement</idno>
            <idno type="stamp" n="BAGAP">UMR BAGAP – Biodiversité, Agroécologie et Aménagement du Paysage </idno>
            <idno type="stamp" n="INSTITUT-AGRO">Institut Agro</idno>
          </seriesStmt>
          <notesStmt>
            <note type="audience" n="1">Not set</note>
            <note type="popular" n="0">No</note>
            <note type="peer" n="1">Yes</note>
          </notesStmt>
          <sourceDesc>
            <biblStruct>
              <analytic>
                <title xml:lang="en">Terroir is a key driver of seed-associated microbial assemblages</title>
                <author role="aut">
                  <persName>
                    <forename type="first">Stéphanie</forename>
                    <surname>Klaedtke</surname>
                  </persName>
                  <idno type="halauthorid">1124273-0</idno>
                  <orgName ref="#struct-108028"/>
                  <affiliation ref="#struct-190320"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Marie Agnes</forename>
                    <surname>Jacques</surname>
                  </persName>
                  <email type="md5">f8fc34d8bd5c2b3b85ac66fbd0562e9d</email>
                  <email type="domain">inrae.fr</email>
                  <idno type="idhal" notation="string">marie-agnes-jacques</idno>
                  <idno type="idhal" notation="numeric">747798</idno>
                  <idno type="halauthorid" notation="string">952221-747798</idno>
                  <idno type="ORCID">https://orcid.org/0000-0002-1442-917X</idno>
                  <orgName ref="#struct-577435"/>
                  <affiliation ref="#struct-190315"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Lorenzo</forename>
                    <surname>Raggi</surname>
                  </persName>
                  <idno type="halauthorid">952570-0</idno>
                  <affiliation ref="#struct-482868"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Anne</forename>
                    <surname>Preveaux</surname>
                  </persName>
                  <email type="md5">84e387b9dee4978e3876aaa04ac90c94</email>
                  <email type="domain">inrae.fr</email>
                  <idno type="idhal" notation="numeric">1202744</idno>
                  <idno type="halauthorid" notation="string">2020955-1202744</idno>
                  <orgName ref="#struct-577435"/>
                  <affiliation ref="#struct-190315"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Sophie</forename>
                    <surname>Bonneau</surname>
                  </persName>
                  <email type="md5">585c2f07f7a59bae428d6564eaedc031</email>
                  <email type="domain">inrae.fr</email>
                  <idno type="idhal" notation="numeric">1202745</idno>
                  <idno type="halauthorid" notation="string">913251-1202745</idno>
                  <affiliation ref="#struct-190315"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Valeria</forename>
                    <surname>Negri</surname>
                  </persName>
                  <idno type="halauthorid">751394-0</idno>
                  <affiliation ref="#struct-482868"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Véronique</forename>
                    <surname>Chable</surname>
                  </persName>
                  <idno type="halauthorid">695960-0</idno>
                  <affiliation ref="#struct-190320"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Matthieu</forename>
                    <surname>Barret</surname>
                  </persName>
                  <email type="md5">c97a09fc070e44f9bdfc808bb88676f1</email>
                  <email type="domain">inrae.fr</email>
                  <idno type="idhal" notation="string">matthieu-barret</idno>
                  <idno type="idhal" notation="numeric">745026</idno>
                  <idno type="halauthorid" notation="string">50741-745026</idno>
                  <idno type="ORCID">https://orcid.org/0000-0002-7633-8476</idno>
                  <idno type="GOOGLE SCHOLAR">https://scholar.google.fr/citations?user=bBaMYNwAAAAJ</idno>
                  <idno type="IDREF">https://www.idref.fr/136763251</idno>
                  <orgName ref="#struct-577435"/>
                  <affiliation ref="#struct-190315"/>
                </author>
              </analytic>
              <monogr>
                <idno type="halJournalId" status="VALID">22298</idno>
                <idno type="issn">1462-2912</idno>
                <idno type="eissn">1462-2920</idno>
                <title level="j">Environmental Microbiology</title>
                <imprint>
                  <publisher>Society for Applied Microbiology and Wiley-Blackwell</publisher>
                  <biblScope unit="volume">18</biblScope>
                  <biblScope unit="issue">6</biblScope>
                  <biblScope unit="pp">1792-1804</biblScope>
                  <date type="datePub">2016</date>
                </imprint>
              </monogr>
              <idno type="doi">10.1111/1462-2920.12977</idno>
              <idno type="prodinra">332866</idno>
              <idno type="wos">000380376700011</idno>
            </biblStruct>
          </sourceDesc>
          <profileDesc>
            <langUsage>
              <language ident="en">English</language>
            </langUsage>
            <textClass>
              <classCode scheme="halDomain" n="sdv.sa">Life Sciences [q-bio]/Agricultural sciences</classCode>
              <classCode scheme="halDomain" n="sde.be">Environmental Sciences/Biodiversity and Ecology</classCode>
              <classCode scheme="halTypology" n="ART">Journal articles</classCode>
              <classCode scheme="halOldTypology" n="ART">Journal articles</classCode>
              <classCode scheme="halTreeTypology" n="ART">Journal articles</classCode>
            </textClass>
            <abstract xml:lang="en">
              <p>Seeds have evolved in association with diverse microbial assemblages that may influence plant growth and health. However, little is known about the composition of seed-associated microbial assemblages and the ecological processes shaping their structures. In this work, we monitored the relative influence of the host genotypes and terroir on the structure of the seed microbiota through metabarcoding analysis of different microbial assemblages associated to five different bean cultivars harvested in two distinct farms. Overall, few bacterial and fungal operational taxonomic units (OTUs) were conserved across all seed samples. The lack of shared OTUs between samples is explained by a significant effect of the farm site on the structure of microbial assemblage, which explained 12.2% and 39.7% of variance in bacterial and fungal diversity across samples. This site-specific effect is reflected by the significant enrichment of 70 OTUs in Brittany and 88 OTUs in Luxembourg that lead to differences in co-occurrence patterns. In contrast, variance in microbial assemblage structure was not explained by host genotype. Altogether, these results suggest that seed-associated microbial assemblage is determined by niche-based processes and that the terroir is a key driver of these selective forces.</p>
            </abstract>
          </profileDesc>
        </biblFull>
      </listBibl>
    </body>
    <back>
      <listOrg type="structures">
        <org type="laboratory" xml:id="struct-190320" status="OLD">
          <orgName>SAD Paysage</orgName>
          <orgName type="acronym">SAD Paysage</orgName>
          <date type="start">2006-01-01</date>
          <date type="end">2016-12-31</date>
          <desc>
            <address>
              <addrLine>AGROCAMPUS OUEST, UPR0980 SAD Paysage, F-35042 Rennes, France</addrLine>
              <country key="FR"/>
            </address>
          </desc>
          <listRelation>
            <relation name="UR0980" active="#struct-92114" type="direct"/>
            <relation active="#struct-108028" type="direct"/>
          </listRelation>
        </org>
        <org type="laboratory" xml:id="struct-190315" status="OLD">
          <idno type="IdRef">073995266</idno>
          <idno type="ISNI">0000 0004 0613 5301</idno>
          <idno type="RNSR">201220383H</idno>
          <idno type="ROR">https://ror.org/02xq0x374</idno>
          <idno type="Wikidata">Q30296202</idno>
          <orgName>Institut de Recherche en Horticulture et Semences</orgName>
          <orgName type="acronym">IRHS</orgName>
          <date type="start">2012-01-01</date>
          <date type="end">2019-12-31</date>
          <desc>
            <address>
              <country key="FR"/>
            </address>
          </desc>
          <listRelation>
            <relation active="#struct-74911" type="direct"/>
            <relation active="#struct-92114" type="direct"/>
            <relation active="#struct-108028" type="direct"/>
          </listRelation>
        </org>
        <org type="laboratory" xml:id="struct-482868" status="INCOMING">
          <orgName>Dipartimento di Scienze Agrarie, Alimentari e Ambientali</orgName>
          <desc>
            <address>
              <country key="IT"/>
            </address>
          </desc>
          <listRelation>
            <relation active="#struct-302646" type="direct"/>
          </listRelation>
        </org>
        <org type="institution" xml:id="struct-92114" status="OLD">
          <idno type="ROR">https://ror.org/01x3gbx83</idno>
          <orgName>Institut National de la Recherche Agronomique</orgName>
          <orgName type="acronym">INRA</orgName>
          <date type="start">1946-05-18</date>
          <date type="end">2019-12-31</date>
          <desc>
            <address>
              <country key="FR"/>
            </address>
            <ref type="url">http://www.inra.fr</ref>
          </desc>
        </org>
        <org type="institution" xml:id="struct-108028" status="OLD">
          <orgName>AGROCAMPUS OUEST</orgName>
          <date type="start">2008-01-01</date>
          <date type="end">2019-12-31</date>
          <desc>
            <address>
              <addrLine>Institut Supérieur des Sciences Agronomiques, Agroalimentaires, Horticoles et du Paysage - 65, rue de St Brieuc - CS 84215 - 35042 Rennes cedex</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">http://www.agrocampus-ouest.fr/</ref>
          </desc>
        </org>
        <org type="institution" xml:id="struct-74911" status="VALID">
          <idno type="IdRef">026402920</idno>
          <idno type="ISNI">0000000122483363</idno>
          <idno type="ROR">https://ror.org/04yrqp957</idno>
          <orgName>Université d'Angers</orgName>
          <orgName type="acronym">UA</orgName>
          <date type="start">1971-10-25</date>
          <desc>
            <address>
              <addrLine>Université d'Angers - 40 Rue de Rennes, BP 73532 - 49035 Angers CEDEX 01</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">http://www.univ-angers.fr/</ref>
          </desc>
        </org>
        <org type="institution" xml:id="struct-302646" status="VALID">
          <idno type="ISNI">0000000417573630</idno>
          <idno type="ROR">https://ror.org/00x27da85</idno>
          <orgName>Università degli Studi di Perugia = University of Perugia</orgName>
          <orgName type="acronym">UNIPG</orgName>
          <date type="start">1308-01-01</date>
          <desc>
            <address>
              <addrLine>piazza Università, 1, 06123 Perugia</addrLine>
              <country key="IT"/>
            </address>
            <ref type="url">https://www.unipg.it/</ref>
          </desc>
        </org>
      </listOrg>
    </back>
  </text>
</TEI>