The rapid advancements of digital technologies, as well as the progress and wide availability of digital cameras and sensors have resulted in a great increase of multimedia data production worldwide. This is also the case for multimedia data that describe the state of the environment, which include huge amounts of data streams from model systems, dedicated stations and amateur sensors, as well as visual environmental information, such as heatmaps and forest satellite images. In parallel, the success of citizen sciences and social networking tools has fostered the emergence of large and structured communities of nature observers (e.g., e-bird, Tela Botanica, etc.), who started to produce outstanding collections of biodiversity multimedia records. Citizens have become increasingly aware of the important role that environmental data (e.g., weather forecast, air quality, life species distributions) play on health issues (e.g., allergies), as well as to a variety of other human activities (e.g., agriculture, trip planning). In addition, such data are very important for understanding environmental issues and phenomena, such as the greenhouse effect, global warming and climate change. Therefore, there is an increasing need for the development of advanced techniques for analysing, interpreting and aggregating environmental data provided in multimedia formats. This will allow for the generation of reliable measurements, as well as for the development of personalised applications that will take into account the state of the environment and the personal health conditions and preferences [5]. Furthermore, it should be noted that the production of accurate and timely knowledge of other living species is essential for a sustainable development of humanity and for biodiversity conservation. Despite the fact that a large number of multimedia analysis techniques has been developed specifically for extracting events and behaviours in human-centered and general purpose applications, such as sports, movies, surveillance, relatively little attention has been paid to the analysis, retrieval and interpretation of environmental information from multimedia content. Only very recent projects such as PESCaDO1 Pl@ntNet2 and PASODOBLE3 have dealt with developing innovative services that take into account environmental information and investigated the extraction and semantic interpretation of the environmental information encoded in multimedia format such as weather, air quality, pollen forecasts or citizen’s multimedia records. In this context, recent works in multimedia analysis of environmental data deal with heatmap analysis for forecast data extraction [3], plant identification [2], underwater visual data analysis [4] and monitoring of the atmosphere [1]. In this context this thematic issue focuses on the analysis, processing, indexing, retrieval and fusion of meteorological data encoded in multimedia, on classification and recognition of plants and biological species for environmental multimedia, as well as on environmental applications. The special issue consists of 7 papers. The first paper deals with “Focussed Crawling of Environmental Web Resources Based on the Combination of Multimedia Evidence” ( 10.1007/s11042-015-2624-3). This work proposes a classifier-guided focussed crawling approach that estimates the relevance of a hyperlink to an unvisited Web resource based on the combination of textual and visual evidence. The proposed focussed crawling approach is applied towards the discovery of environmental Web resources that provide air quality measurements and forecasts. Then, the issue includes a work that focuses on “Environmental data extraction from heatmaps using the AirMerge system” ( 10.1007/s11042-015-2604-7). The AirMerge platform allows data from multiple heterogeneous chemical weather data sources to be continuously collected in a unified repository. The results demonstrate the potential of this approach for being applied also in other areas, in which image-based environmental information retrieval will be needed. Another very challenging task in environmental multimedia retrieval research is plant species identification. In this context, “Semantic-based automatic structuring of leaf images for advanced plant species identification” ( 10.1007/s11042-015-2603-8) is proposed. First, a structuring process is performed by defining geometric parameters based on the analysis of botanical definitions. Then, the species recognition process is based on texture or contour descriptors followed by a KNN classifier. Experiments are carried out using the Scan Pictures of the ImageCLEF 2011 dataset. In this context, we also present “Plant identification: Man vs. Machine On beyond LifeCLEF 2014 plant identification challenge” ( 10.1007/s11042-015-2607-4). This paper reports a large-scale experiment aimed at evaluating how state-of-art computer vision systems perform in identifying plants compared to human expertise. A subset of the dataset used within LifeCLEF 2014 plant identification challenge was employed. One of the main outcomes of the experiment is that machines are still far from beating the best expert botanists. However, the best machine runs are competing with experienced botanists and do clearly outperform beginners and inexperienced test subjects. This shows that the performances of automated plant identification systems are very promising and might open the door to a new generation of ecological surveillance systems. The next paper deals with “Point-based Medialness 2D Shape Description and Identification” ( 10.1007/s11042-015-2605-6). In this work, a perception-based medial point description of a natural form as a framework for a shape representation is proposed, which can then be efficiently used in biological species identification and matching tasks. Also, a robust shape matching algorithm is designed that finds the most relevant targets from a database of templates by comparing feature points in a scale, rotation and translation invariant way. The performance of the proposed method is tested on several databases. The next paper applies the multimedia analysis and retrieval techniques in the water landscape. Specifically it deals with “Fine-Grained Object Recognition in Underwater Visual Data” ( 10.1007/s11042-015-2601-x) and focuses on determining fish species in low-quality image and video data. In this work a label propagation method is presented, which is able to transfer the labels from an annotated fish dataset to a set of 20 million fish images in order to achieve variability in fish appearance. Finally, we present a very interesting application, which deals with seismic damage assessment. In this context a “An image-based seismic damage assessment system” ( 10.1007/s11042-015-2602-9) called IDEAS is proposed, to evaluate seismic damage inside buildings. IDEAS first compares images taken inside a building before and after an earthquake and it then maps the damage to a Mercalli intensity scale. In order to investigate the effectiveness and accuracy of IDEAS, over forty pairs of closed-circuit television (CCTV) images from Youtube website are used. These seven papers deal with very interesting environmental multimedia retrieval challenges and therefore they are appealing to both the experts in the field, as well as to those who wish a snapshot of the current breadth of environmental multimedia retrieval research.