Article Dans Une Revue Bioinformatics Année : 2009

Genoscape: a Cytoscape plug-in to automate the retrieval and integration of gene expression data and molecular networks

Résumé

Genoscape is an open-source Cytoscape plug-in that visually integrates gene expression data sets from GenoScript, a transcriptomic database, and KEGG pathways into Cytoscape networks. The generated visualisation highlights gene expression changes and their statistical significance. The plug-in also allows one to browse GenoScript or import transcriptomic data from other sources through tab-separated text files. Genoscape has been successfully used by researchers to investigate the results of gene expression profiling experiments.

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hal-01290965 , version 1 (19-03-2016)

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Mathieu Clément-Ziza, Christophe Malabat, Christian Weber, Ivan Moszer, Tero Aittokallio, et al.. Genoscape: a Cytoscape plug-in to automate the retrieval and integration of gene expression data and molecular networks. Bioinformatics, 2009, 25 (19), pp. 2617-2618. ⟨10.1093/bioinformatics/btp464⟩. ⟨hal-01290965⟩

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