We prove that the Mahonian-Stirling pairs of permutation statistics $(sor, cyc)$ and $(∈v , \mathrm{rlmin})$ are equidistributed on the set of permutations that correspond to arrangements of $n$ non-atacking rooks on a fixed Ferrers board with $n$ rows and $n$ columns. The proofs are combinatorial and use bijections between matchings and Dyck paths and a new statistic, sorting index for matchings, that we define. We also prove a refinement of this equidistribution result which describes the minimal elements in the permutation cycles and the right-to-left minimum letters.