Chalcogen Bonding: Experimental and Theoretical Determinations from Electron Density Analysis. Geometrical Preferences Driven by Electrophilic−Nucleophilic Interactions - Archive ouverte HAL Accéder directement au contenu
Article Dans Une Revue Crystal Growth & Design Année : 2013

Chalcogen Bonding: Experimental and Theoretical Determinations from Electron Density Analysis. Geometrical Preferences Driven by Electrophilic−Nucleophilic Interactions

Résumé

Chalcogen bonding has been investigated in terms of the electron density distribution ρ(r) around chalcogen atoms. The evolution of ρ(r) along the series of chalcogen atoms is shown based on ab initio calculations on chalcogenophthalic anhydrides C8O2H4Chal (Chal = O, S, Se, and Te), where the Chal atom is in its sp3 hybridization. From a detailed analysis of the experimental and theoretical electron density and the L(r) = −∇2ρ(r) function in the crystal phase of C8O2H4Se, we characterize directionality and strength of chalcogen bonding (Se···O and Se···Se) and hydrogen bonding (Se···H) interactions. In addition, several isolated dimers and a trimer of C8O2H4Se have been also studied at the X-ray geometry in order to compare interaction energies with those estimated from the measured electron density. Similarly to halogen atoms in halogen bonding interactions, the anisotropic distribution of ρ(r) around the Chal atoms was found to be at the origin of chalcogen bonding. Therefore, the concepts, developed earlier for halogen bonding, are extended here to chalcogen bonding interactions. From the results of this work, the L(r) function proves to be more precise than the σ-hole concept to identify electrophilic sites of Se-atoms in sp3 hybridization.

Domaines

Chimie organique
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Dates et versions

hal-01151698 , version 1 (13-05-2015)

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Brezgunova Mariya, Julien Lieffrig, Emmanuel Aubert, Slimane Dahaoui, Pierre Fertey, et al.. Chalcogen Bonding: Experimental and Theoretical Determinations from Electron Density Analysis. Geometrical Preferences Driven by Electrophilic−Nucleophilic Interactions. Crystal Growth & Design, 2013, 13 (8), pp.3283-3289. ⟨10.1021/cg400683u⟩. ⟨hal-01151698⟩
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