tmle.npvi: targeted, integrative search of associations between DNA copy number and gene expression, accounting for DNA methylation: Fig. 1. - Archive ouverte HAL Access content directly
Journal Articles Bioinformatics Year : 2015

tmle.npvi: targeted, integrative search of associations between DNA copy number and gene expression, accounting for DNA methylation: Fig. 1.

Abstract

We describe the implementation of the method introduced by Chambaz et al. (2012). We also demonstrate its genome-wide application to the integrative search of new regions with strong association between DNA copy number and gene expression accounting for DNA methylation in breast cancers. Availability and implementation: An open-source R package tmle.npvi is available from CRAN (http://cran.r-project.org/). Contact: pierre.neuvial@genopole.cnrs.fr

Keywords

Fichier principal
Vignette du fichier
tmle.npvi.pdf (374.88 Ko) Télécharger le fichier
Origin : Files produced by the author(s)
Loading...

Dates and versions

hal-01113680 , version 1 (06-02-2015)

Identifiers

Cite

Antoine Chambaz, Pierre Neuvial. tmle.npvi: targeted, integrative search of associations between DNA copy number and gene expression, accounting for DNA methylation: Fig. 1.. Bioinformatics, 2015, 31 (18), pp.3054-6. ⟨10.1093/bioinformatics/btv320⟩. ⟨hal-01113680⟩
268 View
123 Download

Altmetric

Share

Gmail Facebook X LinkedIn More