<?xml version="1.0" encoding="utf-8"?>
<TEI xmlns="http://www.tei-c.org/ns/1.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:hal="http://hal.archives-ouvertes.fr/" xmlns:gml="http://www.opengis.net/gml/3.3/" xmlns:gmlce="http://www.opengis.net/gml/3.3/ce" version="1.1" xsi:schemaLocation="http://www.tei-c.org/ns/1.0 http://api.archives-ouvertes.fr/documents/aofr-sword.xsd">
  <teiHeader>
    <fileDesc>
      <titleStmt>
        <title>HAL TEI export of hal-01019568</title>
      </titleStmt>
      <publicationStmt>
        <distributor>CCSD</distributor>
        <availability status="restricted">
          <licence target="https://creativecommons.org/publicdomain/zero/1.0/">CC0 1.0 - Universal</licence>
        </availability>
        <date when="2026-05-10T17:41:20+02:00"/>
      </publicationStmt>
      <sourceDesc>
        <p part="N">HAL API Platform</p>
      </sourceDesc>
    </fileDesc>
  </teiHeader>
  <text>
    <body>
      <listBibl>
        <biblFull>
          <titleStmt>
            <title xml:lang="en">Design and characterization of a 52K SNP chip for goats</title>
            <author role="aut">
              <persName>
                <forename type="first">Gwenola</forename>
                <surname>Tosser-Klopp</surname>
              </persName>
              <email type="md5">855b681ae3f5b821ea6c1de503ab228b</email>
              <email type="domain">inrae.fr</email>
              <idno type="idhal" notation="string">gwenola-tosser</idno>
              <idno type="idhal" notation="numeric">737163</idno>
              <idno type="halauthorid" notation="string">9188-737163</idno>
              <idno type="ORCID">https://orcid.org/0000-0003-0550-4673</idno>
              <idno type="IDREF">https://www.idref.fr/067312497</idno>
              <orgName ref="#struct-577435"/>
              <affiliation ref="#struct-1002068"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Philippe</forename>
                <surname>Bardou</surname>
              </persName>
              <email type="md5">1430b2d904925f92733231889c890161</email>
              <email type="domain">inrae.fr</email>
              <idno type="idhal" notation="string">philippe-bardou</idno>
              <idno type="idhal" notation="numeric">737785</idno>
              <idno type="halauthorid" notation="string">50293-737785</idno>
              <idno type="ORCID">https://orcid.org/0000-0002-0004-0251</idno>
              <affiliation ref="#struct-1002068"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Olivier</forename>
                <surname>Bouchez</surname>
              </persName>
              <email type="md5">5d10efd3a5952dcdcf87aab9c0f9b02e</email>
              <email type="domain">inrae.fr</email>
              <idno type="idhal" notation="string">obouchez</idno>
              <idno type="idhal" notation="numeric">1151095</idno>
              <idno type="halauthorid" notation="string">655433-1151095</idno>
              <idno type="ORCID">https://orcid.org/0000-0002-7255-0058</idno>
              <affiliation ref="#struct-1002068"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Cédric</forename>
                <surname>Cabau</surname>
              </persName>
              <email type="md5">fb658d730456e2d246ccf6e20b7b1f30</email>
              <email type="domain">inrae.fr</email>
              <idno type="idhal" notation="string">cedric-cabau</idno>
              <idno type="idhal" notation="numeric">736396</idno>
              <idno type="halauthorid" notation="string">16421-736396</idno>
              <idno type="ORCID">https://orcid.org/0000-0001-8560-4003</idno>
              <idno type="IDREF">https://www.idref.fr/236613405</idno>
              <orgName ref="#struct-577435"/>
              <affiliation ref="#struct-1002068"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Richard</forename>
                <surname>Crooijmans</surname>
              </persName>
              <idno type="halauthorid">737514-0</idno>
              <affiliation ref="#struct-257127"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Yang</forename>
                <surname>Dong</surname>
              </persName>
              <idno type="halauthorid">844910-0</idno>
              <affiliation ref="#struct-260379"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Cecile</forename>
                <surname>Donnadieu-Tonon</surname>
              </persName>
              <idno type="halauthorid">844911-0</idno>
              <affiliation ref="#struct-1002068"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Andre</forename>
                <surname>Eggen</surname>
              </persName>
              <idno type="halauthorid">695072-0</idno>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Henri C. M.</forename>
                <surname>Heuven</surname>
              </persName>
              <idno type="halauthorid">844912-0</idno>
              <affiliation ref="#struct-134002"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Saadiah</forename>
                <surname>Jamli</surname>
              </persName>
              <idno type="halauthorid">844385-0</idno>
              <affiliation ref="#struct-260380"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Abdullah Johari</forename>
                <surname>Jiken</surname>
              </persName>
              <idno type="halauthorid">844913-0</idno>
              <affiliation ref="#struct-260380"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Christophe</forename>
                <surname>Klopp</surname>
              </persName>
              <email type="md5">f93857cbb1e31166591501eb948338d3</email>
              <email type="domain">inrae.fr</email>
              <idno type="idhal" notation="string">0000-0001-7126-5477</idno>
              <idno type="idhal" notation="numeric">735911</idno>
              <idno type="halauthorid" notation="string">2518060-735911</idno>
              <idno type="ORCID">https://orcid.org/0000-0001-7126-5477</idno>
              <orgName ref="#struct-577435"/>
              <affiliation ref="#struct-25799"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Cynthia T</forename>
                <surname>Lawley</surname>
              </persName>
              <idno type="halauthorid">844914-0</idno>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">John</forename>
                <surname>Mcewan</surname>
              </persName>
              <idno type="halauthorid">764665-0</idno>
              <affiliation ref="#struct-260381"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Patrice</forename>
                <surname>Martin</surname>
              </persName>
              <idno type="halauthorid">654899-0</idno>
              <affiliation ref="#struct-123239"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Carole</forename>
                <surname>Moreno-Romieux</surname>
              </persName>
              <email type="md5">1b6c4e6b237bf72941e87a28a8a29987</email>
              <email type="domain">inrae.fr</email>
              <idno type="idhal" notation="string">carole-moreno-romieux</idno>
              <idno type="idhal" notation="numeric">744537</idno>
              <idno type="halauthorid" notation="string">897936-744537</idno>
              <orgName ref="#struct-577435"/>
              <affiliation ref="#struct-37728"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Philippe</forename>
                <surname>Mulsant</surname>
              </persName>
              <idno type="halauthorid">695891-0</idno>
              <affiliation ref="#struct-1002068"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Ibouniyamine</forename>
                <surname>Nabihoudine</surname>
              </persName>
              <idno type="halauthorid">844387-0</idno>
              <affiliation ref="#struct-1002068"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Eric</forename>
                <surname>Pailhoux</surname>
              </persName>
              <email type="md5">e86fc575422cf24d81a76defdc8b07d3</email>
              <email type="domain">inrae.fr</email>
              <idno type="idhal" notation="string">eric-pailhoux</idno>
              <idno type="idhal" notation="numeric">743079</idno>
              <idno type="halauthorid" notation="string">16586-743079</idno>
              <idno type="ORCID">https://orcid.org/0000-0001-8012-9143</idno>
              <idno type="IDREF">https://www.idref.fr/100506178</idno>
              <orgName ref="#struct-577435"/>
              <affiliation ref="#struct-2183"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Isabelle</forename>
                <surname>Palhière</surname>
              </persName>
              <email type="md5">ce417f5d5f745b1d012f03d76a52fe96</email>
              <email type="domain">inrae.fr</email>
              <idno type="idhal" notation="string">isabelle-palhiere</idno>
              <idno type="idhal" notation="numeric">1203129</idno>
              <idno type="halauthorid" notation="string">844388-1203129</idno>
              <idno type="ORCID">https://orcid.org/0009-0009-6128-9569</idno>
              <affiliation ref="#struct-37728"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Rachel</forename>
                <surname>Rupp</surname>
              </persName>
              <email type="md5">e0bbdf2f084f77b454f3e9a599cca367</email>
              <email type="domain">toulouse.inrae.fr</email>
              <idno type="idhal" notation="string">rachel-rupp</idno>
              <idno type="idhal" notation="numeric">1203121</idno>
              <idno type="halauthorid" notation="string">558134-1203121</idno>
              <idno type="ORCID">https://orcid.org/0000-0003-3375-5816</idno>
              <affiliation ref="#struct-37728"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Julien</forename>
                <surname>Sarry</surname>
              </persName>
              <idno type="halauthorid">721333-0</idno>
              <affiliation ref="#struct-1002068"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Brian L.</forename>
                <surname>Sayre</surname>
              </persName>
              <idno type="halauthorid">844915-0</idno>
              <affiliation ref="#struct-260382"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Aurelie</forename>
                <surname>Tircazes</surname>
              </persName>
              <email type="md5">cc2aa0c0af8221e138771169070b7a7f</email>
              <email type="domain">envt.fr</email>
              <idno type="idhal" notation="string">aurelie-secula</idno>
              <idno type="idhal" notation="numeric">1422891</idno>
              <idno type="halauthorid" notation="string">844390-1422891</idno>
              <idno type="ORCID">https://orcid.org/0000-0002-4415-9369</idno>
              <idno type="GOOGLE SCHOLAR">https://scholar.google.fr/citations?user=YQ_dg4MAAAAJ</idno>
              <affiliation ref="#struct-37728"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Jun</forename>
                <surname>Wang</surname>
              </persName>
              <email type="md5">044f1918befe0efa5838b81637abd5a5</email>
              <email type="domain">genomics.cn</email>
              <idno type="idhal" notation="numeric">881572</idno>
              <idno type="halauthorid" notation="string">501871-881572</idno>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Wen</forename>
                <surname>Wang</surname>
              </persName>
              <email type="md5">83caea946334d5d1b81fceaab88e5fb8</email>
              <email type="domain">mail.kiz.ac.cn</email>
              <idno type="idhal" notation="numeric">858635</idno>
              <idno type="halauthorid" notation="string">382267-858635</idno>
              <affiliation ref="#struct-260379"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Wenguang</forename>
                <surname>Zhang</surname>
              </persName>
              <idno type="halauthorid">844392-0</idno>
              <affiliation ref="#struct-260379"/>
              <affiliation ref="#struct-260383"/>
            </author>
            <editor role="depositor">
              <persName>
                <forename>Archive Ouverte</forename>
                <surname>ProdInra</surname>
              </persName>
              <email type="md5">9e5ed7d56b52b3d4383123b1ffb42236</email>
              <email type="domain">inrae.fr</email>
            </editor>
            <funder>ANR-09-GENM-009-03 GENIDOV, ANR CHEST-454, CAPRISNIP programme: UNCEIA, CAPGENES and APIS-GENE French Breeding organizations</funder>
          </titleStmt>
          <editionStmt>
            <edition n="v1" type="current">
              <date type="whenSubmitted">2020-05-28 11:51:17</date>
              <date type="whenModified">2026-03-18 14:22:02</date>
              <date type="whenReleased">2020-05-28 11:51:38</date>
              <date type="whenProduced">2014</date>
              <date type="whenEndEmbargoed">2020-05-28</date>
              <ref type="file" target="https://hal.science/hal-01019568v1/document">
                <date notBefore="2020-05-28"/>
              </ref>
              <ref type="file" subtype="greenPublisher" n="1" target="https://hal.science/hal-01019568v1/file/2014_Tosser%20Klopp_Plos%20One_1.PDF" id="file-2639352-2462971">
                <date notBefore="2020-05-28"/>
              </ref>
              <ref type="externalLink" target="https://doi.org/10.1371/journal.pone.0086227"/>
              <fs>
                <f name="inra_etatDocument_local" notation="string" n="VE">
                  <string>inra_etatDocument_local_VE</string>
                </f>
                <f name="inra_publicVise_local" notation="string" n="SC">
                  <string>inra_publicVise_local_SC</string>
                </f>
              </fs>
            </edition>
            <respStmt>
              <resp>contributor</resp>
              <name key="132775">
                <persName>
                  <forename>Archive Ouverte</forename>
                  <surname>ProdInra</surname>
                </persName>
                <email type="md5">9e5ed7d56b52b3d4383123b1ffb42236</email>
                <email type="domain">inrae.fr</email>
              </name>
            </respStmt>
          </editionStmt>
          <publicationStmt>
            <distributor>CCSD</distributor>
            <idno type="halId">hal-01019568</idno>
            <idno type="halUri">https://hal.science/hal-01019568</idno>
            <idno type="halBibtex">tosserklopp:hal-01019568</idno>
            <idno type="halRefHtml">&lt;i&gt;PLoS ONE&lt;/i&gt;, 2014, 9, online (1), Non paginé. &lt;a target="_blank" href="https://dx.doi.org/10.1371/journal.pone.0086227"&gt;&amp;#x27E8;10.1371/journal.pone.0086227&amp;#x27E9;&lt;/a&gt;</idno>
            <idno type="halRef">PLoS ONE, 2014, 9, online (1), Non paginé. &amp;#x27E8;10.1371/journal.pone.0086227&amp;#x27E9;</idno>
            <availability status="restricted">
              <licence target="https://creativecommons.org/licenses/by/4.0/">CC BY 4.0 - Attribution<ref corresp="#file-2639352-2462971"/></licence>
            </availability>
          </publicationStmt>
          <seriesStmt>
            <idno type="stamp" n="AGROPARISTECH">AgroParisTech</idno>
            <idno type="stamp" n="CNRS">CNRS - Centre national de la recherche scientifique</idno>
            <idno type="stamp" n="INRA">INRA - Institut national de la recherche agronomique</idno>
            <idno type="stamp" n="AGREENIUM">Archive ouverte en agrobiosciences</idno>
            <idno type="stamp" n="ENVA">Ecole Nationale Vétérinaire d'Alfort</idno>
            <idno type="stamp" n="INRAE">Institut National de Recherche en Agriculture, Alimentation et Environnement</idno>
            <idno type="stamp" n="BREED">Biologie de la reproduction, environnement, épigénétique et développement</idno>
            <idno type="stamp" n="GENETIQUE_ANIMALE">Département GA INRAE</idno>
            <idno type="stamp" n="GENPHYSE">Génétique Physiologie et Systèmes d'Elevage</idno>
            <idno type="stamp" n="INRAEOCCITANIETOULOUSE" corresp="INRAE">INRAE Occitanie Toulouse</idno>
            <idno type="stamp" n="PHASE">Physiologie animale et systèmes d’élevage</idno>
            <idno type="stamp" n="TOULOUSE-INP">Toulouse - INP</idno>
            <idno type="stamp" n="UT3-INP">Université de Toulouse / Toulouse INP</idno>
            <idno type="stamp" n="UT3-TOULOUSEINP">Université de Toulouse / Toulouse INP</idno>
            <idno type="stamp" n="GABI">Génétique Animale et Biologie Intégrative </idno>
            <idno type="stamp" n="TEST3-HALCNRS">TEST3-HALCNRS</idno>
            <idno type="stamp" n="MATHNUM">Département MathNum</idno>
            <idno type="stamp" n="MIAT">Unité de Mathématiques et Informatique Appliquées de Toulouse</idno>
            <idno type="stamp" n="ENVT">École Nationale Vétérinaire de Toulouse </idno>
            <idno type="stamp" n="TEST-MATHNUM">Test MathNum</idno>
          </seriesStmt>
          <notesStmt>
            <note type="commentary">Chantier qualité GA</note>
            <note type="audience" n="1">Not set</note>
            <note type="popular" n="0">No</note>
            <note type="peer" n="1">Yes</note>
          </notesStmt>
          <sourceDesc>
            <biblStruct>
              <analytic>
                <title xml:lang="en">Design and characterization of a 52K SNP chip for goats</title>
                <author role="aut">
                  <persName>
                    <forename type="first">Gwenola</forename>
                    <surname>Tosser-Klopp</surname>
                  </persName>
                  <email type="md5">855b681ae3f5b821ea6c1de503ab228b</email>
                  <email type="domain">inrae.fr</email>
                  <idno type="idhal" notation="string">gwenola-tosser</idno>
                  <idno type="idhal" notation="numeric">737163</idno>
                  <idno type="halauthorid" notation="string">9188-737163</idno>
                  <idno type="ORCID">https://orcid.org/0000-0003-0550-4673</idno>
                  <idno type="IDREF">https://www.idref.fr/067312497</idno>
                  <orgName ref="#struct-577435"/>
                  <affiliation ref="#struct-1002068"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Philippe</forename>
                    <surname>Bardou</surname>
                  </persName>
                  <email type="md5">1430b2d904925f92733231889c890161</email>
                  <email type="domain">inrae.fr</email>
                  <idno type="idhal" notation="string">philippe-bardou</idno>
                  <idno type="idhal" notation="numeric">737785</idno>
                  <idno type="halauthorid" notation="string">50293-737785</idno>
                  <idno type="ORCID">https://orcid.org/0000-0002-0004-0251</idno>
                  <affiliation ref="#struct-1002068"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Olivier</forename>
                    <surname>Bouchez</surname>
                  </persName>
                  <email type="md5">5d10efd3a5952dcdcf87aab9c0f9b02e</email>
                  <email type="domain">inrae.fr</email>
                  <idno type="idhal" notation="string">obouchez</idno>
                  <idno type="idhal" notation="numeric">1151095</idno>
                  <idno type="halauthorid" notation="string">655433-1151095</idno>
                  <idno type="ORCID">https://orcid.org/0000-0002-7255-0058</idno>
                  <affiliation ref="#struct-1002068"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Cédric</forename>
                    <surname>Cabau</surname>
                  </persName>
                  <email type="md5">fb658d730456e2d246ccf6e20b7b1f30</email>
                  <email type="domain">inrae.fr</email>
                  <idno type="idhal" notation="string">cedric-cabau</idno>
                  <idno type="idhal" notation="numeric">736396</idno>
                  <idno type="halauthorid" notation="string">16421-736396</idno>
                  <idno type="ORCID">https://orcid.org/0000-0001-8560-4003</idno>
                  <idno type="IDREF">https://www.idref.fr/236613405</idno>
                  <orgName ref="#struct-577435"/>
                  <affiliation ref="#struct-1002068"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Richard</forename>
                    <surname>Crooijmans</surname>
                  </persName>
                  <idno type="halauthorid">737514-0</idno>
                  <affiliation ref="#struct-257127"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Yang</forename>
                    <surname>Dong</surname>
                  </persName>
                  <idno type="halauthorid">844910-0</idno>
                  <affiliation ref="#struct-260379"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Cecile</forename>
                    <surname>Donnadieu-Tonon</surname>
                  </persName>
                  <idno type="halauthorid">844911-0</idno>
                  <affiliation ref="#struct-1002068"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Andre</forename>
                    <surname>Eggen</surname>
                  </persName>
                  <idno type="halauthorid">695072-0</idno>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Henri C. M.</forename>
                    <surname>Heuven</surname>
                  </persName>
                  <idno type="halauthorid">844912-0</idno>
                  <affiliation ref="#struct-134002"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Saadiah</forename>
                    <surname>Jamli</surname>
                  </persName>
                  <idno type="halauthorid">844385-0</idno>
                  <affiliation ref="#struct-260380"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Abdullah Johari</forename>
                    <surname>Jiken</surname>
                  </persName>
                  <idno type="halauthorid">844913-0</idno>
                  <affiliation ref="#struct-260380"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Christophe</forename>
                    <surname>Klopp</surname>
                  </persName>
                  <email type="md5">f93857cbb1e31166591501eb948338d3</email>
                  <email type="domain">inrae.fr</email>
                  <idno type="idhal" notation="string">0000-0001-7126-5477</idno>
                  <idno type="idhal" notation="numeric">735911</idno>
                  <idno type="halauthorid" notation="string">2518060-735911</idno>
                  <idno type="ORCID">https://orcid.org/0000-0001-7126-5477</idno>
                  <orgName ref="#struct-577435"/>
                  <affiliation ref="#struct-25799"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Cynthia T</forename>
                    <surname>Lawley</surname>
                  </persName>
                  <idno type="halauthorid">844914-0</idno>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">John</forename>
                    <surname>Mcewan</surname>
                  </persName>
                  <idno type="halauthorid">764665-0</idno>
                  <affiliation ref="#struct-260381"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Patrice</forename>
                    <surname>Martin</surname>
                  </persName>
                  <idno type="halauthorid">654899-0</idno>
                  <affiliation ref="#struct-123239"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Carole</forename>
                    <surname>Moreno-Romieux</surname>
                  </persName>
                  <email type="md5">1b6c4e6b237bf72941e87a28a8a29987</email>
                  <email type="domain">inrae.fr</email>
                  <idno type="idhal" notation="string">carole-moreno-romieux</idno>
                  <idno type="idhal" notation="numeric">744537</idno>
                  <idno type="halauthorid" notation="string">897936-744537</idno>
                  <orgName ref="#struct-577435"/>
                  <affiliation ref="#struct-37728"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Philippe</forename>
                    <surname>Mulsant</surname>
                  </persName>
                  <idno type="halauthorid">695891-0</idno>
                  <affiliation ref="#struct-1002068"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Ibouniyamine</forename>
                    <surname>Nabihoudine</surname>
                  </persName>
                  <idno type="halauthorid">844387-0</idno>
                  <affiliation ref="#struct-1002068"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Eric</forename>
                    <surname>Pailhoux</surname>
                  </persName>
                  <email type="md5">e86fc575422cf24d81a76defdc8b07d3</email>
                  <email type="domain">inrae.fr</email>
                  <idno type="idhal" notation="string">eric-pailhoux</idno>
                  <idno type="idhal" notation="numeric">743079</idno>
                  <idno type="halauthorid" notation="string">16586-743079</idno>
                  <idno type="ORCID">https://orcid.org/0000-0001-8012-9143</idno>
                  <idno type="IDREF">https://www.idref.fr/100506178</idno>
                  <orgName ref="#struct-577435"/>
                  <affiliation ref="#struct-2183"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Isabelle</forename>
                    <surname>Palhière</surname>
                  </persName>
                  <email type="md5">ce417f5d5f745b1d012f03d76a52fe96</email>
                  <email type="domain">inrae.fr</email>
                  <idno type="idhal" notation="string">isabelle-palhiere</idno>
                  <idno type="idhal" notation="numeric">1203129</idno>
                  <idno type="halauthorid" notation="string">844388-1203129</idno>
                  <idno type="ORCID">https://orcid.org/0009-0009-6128-9569</idno>
                  <affiliation ref="#struct-37728"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Rachel</forename>
                    <surname>Rupp</surname>
                  </persName>
                  <email type="md5">e0bbdf2f084f77b454f3e9a599cca367</email>
                  <email type="domain">toulouse.inrae.fr</email>
                  <idno type="idhal" notation="string">rachel-rupp</idno>
                  <idno type="idhal" notation="numeric">1203121</idno>
                  <idno type="halauthorid" notation="string">558134-1203121</idno>
                  <idno type="ORCID">https://orcid.org/0000-0003-3375-5816</idno>
                  <affiliation ref="#struct-37728"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Julien</forename>
                    <surname>Sarry</surname>
                  </persName>
                  <idno type="halauthorid">721333-0</idno>
                  <affiliation ref="#struct-1002068"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Brian L.</forename>
                    <surname>Sayre</surname>
                  </persName>
                  <idno type="halauthorid">844915-0</idno>
                  <affiliation ref="#struct-260382"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Aurelie</forename>
                    <surname>Tircazes</surname>
                  </persName>
                  <email type="md5">cc2aa0c0af8221e138771169070b7a7f</email>
                  <email type="domain">envt.fr</email>
                  <idno type="idhal" notation="string">aurelie-secula</idno>
                  <idno type="idhal" notation="numeric">1422891</idno>
                  <idno type="halauthorid" notation="string">844390-1422891</idno>
                  <idno type="ORCID">https://orcid.org/0000-0002-4415-9369</idno>
                  <idno type="GOOGLE SCHOLAR">https://scholar.google.fr/citations?user=YQ_dg4MAAAAJ</idno>
                  <affiliation ref="#struct-37728"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Jun</forename>
                    <surname>Wang</surname>
                  </persName>
                  <email type="md5">044f1918befe0efa5838b81637abd5a5</email>
                  <email type="domain">genomics.cn</email>
                  <idno type="idhal" notation="numeric">881572</idno>
                  <idno type="halauthorid" notation="string">501871-881572</idno>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Wen</forename>
                    <surname>Wang</surname>
                  </persName>
                  <email type="md5">83caea946334d5d1b81fceaab88e5fb8</email>
                  <email type="domain">mail.kiz.ac.cn</email>
                  <idno type="idhal" notation="numeric">858635</idno>
                  <idno type="halauthorid" notation="string">382267-858635</idno>
                  <affiliation ref="#struct-260379"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Wenguang</forename>
                    <surname>Zhang</surname>
                  </persName>
                  <idno type="halauthorid">844392-0</idno>
                  <affiliation ref="#struct-260379"/>
                  <affiliation ref="#struct-260383"/>
                </author>
              </analytic>
              <monogr>
                <idno type="halJournalId" status="VALID">28700</idno>
                <idno type="issn">1932-6203</idno>
                <idno type="eissn">1932-6203</idno>
                <title level="j">PLoS ONE</title>
                <imprint>
                  <publisher>Public Library of Science</publisher>
                  <biblScope unit="volume">9, online</biblScope>
                  <biblScope unit="issue">1</biblScope>
                  <biblScope unit="pp">Non paginé</biblScope>
                  <date type="datePub">2014</date>
                </imprint>
              </monogr>
              <idno type="doi">10.1371/journal.pone.0086227</idno>
              <idno type="prodinra">458959</idno>
              <idno type="pubmed">24465974</idno>
              <idno type="wos">000330283100129</idno>
            </biblStruct>
          </sourceDesc>
          <profileDesc>
            <langUsage>
              <language ident="en">English</language>
            </langUsage>
            <textClass>
              <keywords scheme="author">
                <term xml:lang="hr">snp</term>
                <term xml:lang="hr">goat</term>
              </keywords>
              <classCode scheme="halDomain" n="sdv.sa">Life Sciences [q-bio]/Agricultural sciences</classCode>
              <classCode scheme="halTypology" n="ART">Journal articles</classCode>
              <classCode scheme="halOldTypology" n="ART">Journal articles</classCode>
              <classCode scheme="halTreeTypology" n="ART">Journal articles</classCode>
            </textClass>
            <abstract xml:lang="en">
              <p>The success of Genome Wide Association Studies in the discovery of sequence variation linked to complex traits in humans has increased interest in high throughput SNP genotyping assays in livestock species. Primary goals are QTL detection and genomic selection. The purpose here was design of a 50-60,000 SNP chip for goats. The success of a moderate density SNP assay depends on reliable bioinformatic SNP detection procedures, the technological success rate of the SNP design, even spacing of SNPs on the genome and selection of Minor Allele Frequencies (MAF) suitable to use in diverse breeds. Through the federation of three SNP discovery projects consolidated as the International Goat Genome Consortium, we have identified approximately twelve million high quality SNP variants in the goat genome stored in a database together with their biological and technical characteristics. These SNPs were identified within and between six breeds (meat, milk and mixed): Alpine, Boer, Creole, Katjang, Saanen and Savanna, comprising a total of 97 animals. Whole genome and Reduced Representation Library sequences were aligned on &gt;10 kb scaffolds of the de novo goat genome assembly. The 60,000 selected SNPs, evenly spaced on the goat genome, were submitted for oligo manufacturing (Illumina, Inc) and published in dbSNP along with flanking sequences and map position on goat assemblies (i.e. scaffolds and pseudo-chromosomes), sheep genome V2 and cattle UMD3.1 assembly. Ten breeds were then used to validate the SNP content and 52,295 loci could be successfully genotyped and used to generate a final cluster file. The combined strategy of using mainly whole genome Next Generation Sequencing and mapping on a contig genome assembly, complemented with Illumina design tools proved to be efficient in producing this GoatSNP50 chip. Advances in use of molecular markers are expected to accelerate goat genomic studies in coming years.</p>
            </abstract>
          </profileDesc>
        </biblFull>
      </listBibl>
    </body>
    <back>
      <listOrg type="structures">
        <org type="laboratory" xml:id="struct-1002068" status="OLD">
          <orgName>Laboratoire de Génétique Cellulaire</orgName>
          <orgName type="acronym">LGC</orgName>
          <date type="start">1968-01-01</date>
          <date type="end">2013-12-31</date>
          <desc>
            <address>
              <addrLine>23 Chemin des Capelles BP 87614 31076 Toulouse Cedex 3</addrLine>
              <country key="FR"/>
            </address>
          </desc>
          <listRelation>
            <relation name="UR 0444" active="#struct-92114" type="direct"/>
            <relation active="#struct-300421" type="direct"/>
            <relation active="#struct-448187" type="indirect"/>
            <relation active="#struct-443875" type="indirect"/>
          </listRelation>
        </org>
        <org type="laboratory" xml:id="struct-257127" status="INCOMING">
          <orgName>Animal Breeding and Genomics Centre</orgName>
          <desc>
            <address>
              <addrLine>Wageningen</addrLine>
              <country key="NL"/>
            </address>
          </desc>
          <listRelation>
            <relation active="#struct-356395" type="direct"/>
          </listRelation>
        </org>
        <org type="laboratory" xml:id="struct-260379" status="INCOMING">
          <orgName>Kunming Institute of Zoology, State Key Laboratory of Genetic Resources and Evolution</orgName>
          <desc>
            <address>
              <addrLine>Kunming</addrLine>
              <country key="CN"/>
            </address>
          </desc>
          <listRelation>
            <relation active="#struct-239582" type="direct"/>
          </listRelation>
        </org>
        <org type="laboratory" xml:id="struct-134002" status="INCOMING">
          <orgName>Faculty of Veterinary Medicine</orgName>
          <desc>
            <address>
              <addrLine>utrecht</addrLine>
              <country key="NL"/>
            </address>
          </desc>
          <listRelation>
            <relation active="#struct-300572" type="direct"/>
          </listRelation>
        </org>
        <org type="laboratory" xml:id="struct-260380" status="INCOMING">
          <orgName>Strategic Livestock Research Centre</orgName>
          <desc>
            <address>
              <addrLine>Kuala Lumpur</addrLine>
              <country key="MY"/>
            </address>
          </desc>
          <listRelation>
            <relation active="#struct-361864" type="direct"/>
          </listRelation>
        </org>
        <org type="laboratory" xml:id="struct-25799" status="OLD">
          <orgName>Unité de Biométrie et Intelligence Artificielle (ancêtre de MIAT)</orgName>
          <orgName type="acronym">UBIA</orgName>
          <date type="start">2004-01-01</date>
          <date type="end">2012-12-31</date>
          <desc>
            <address>
              <addrLine>Centre Inra de Toulouse Midi-Pyrénées Chemin de Borde-Rouge-Auzeville BP 52627 F-31326 Castanet-Tolosan cedex</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">http://mia.toulouse.inra.fr/index.php?id=202</ref>
          </desc>
          <listRelation>
            <relation name="UR0875" active="#struct-92114" type="direct"/>
          </listRelation>
        </org>
        <org type="laboratory" xml:id="struct-260381" status="INCOMING">
          <orgName>Invermay Agricultural Center</orgName>
          <desc>
            <address>
              <addrLine>Mosgiel</addrLine>
              <country key="NZ"/>
            </address>
          </desc>
          <listRelation>
            <relation active="#struct-361333" type="direct"/>
          </listRelation>
        </org>
        <org type="laboratory" xml:id="struct-123239" status="OLD">
          <orgName>Génétique Animale et Biologie Intégrative</orgName>
          <orgName type="acronym">GABI</orgName>
          <date type="end">2019-12-31</date>
          <desc>
            <address>
              <addrLine>Domaine de Vilvert F-78252 Jouy-en-Josas</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">http://www6.jouy.inra.fr/gabi</ref>
          </desc>
          <listRelation>
            <relation name="UMR1313" active="#struct-92114" type="direct"/>
            <relation active="#struct-148117" type="direct"/>
          </listRelation>
        </org>
        <org type="laboratory" xml:id="struct-37728" status="OLD">
          <orgName>Station d'Amélioration Génétique des Animaux</orgName>
          <orgName type="acronym">SAGA</orgName>
          <date type="start">1965-01-01</date>
          <date type="end">2014-12-31</date>
          <desc>
            <address>
              <addrLine>24 Chemin de Borde Rouge - Auzeville CS 52627 - 31326 Castanet Tolosan Cedex</addrLine>
              <country key="FR"/>
            </address>
          </desc>
          <listRelation>
            <relation name="UR0631" active="#struct-92114" type="direct"/>
          </listRelation>
        </org>
        <org type="laboratory" xml:id="struct-2183" status="OLD">
          <orgName>Biologie du développement et reproduction</orgName>
          <orgName type="acronym">BDR</orgName>
          <date type="start">1995-01-01</date>
          <date type="end">2014-12-31</date>
          <desc>
            <address>
              <addrLine>Bâtiment 440 Domaine Vilvert 78352 JOUY EN JOSAS CEDEX</addrLine>
              <country key="FR"/>
            </address>
          </desc>
          <listRelation>
            <relation active="#struct-34256" type="direct"/>
            <relation name="UMR1198" active="#struct-92114" type="direct"/>
            <relation name="FRE2857" active="#struct-441569" type="direct"/>
          </listRelation>
        </org>
        <org type="laboratory" xml:id="struct-260382" status="INCOMING">
          <orgName>Department of Biology</orgName>
          <desc>
            <address>
              <addrLine>Petersburg</addrLine>
              <country key="US"/>
            </address>
          </desc>
          <listRelation>
            <relation active="#struct-361865" type="direct"/>
          </listRelation>
        </org>
        <org type="laboratory" xml:id="struct-260383" status="INCOMING">
          <orgName>Inner Mongolia Key Laboratory of Animal Genetics, Breeding and Reproduction</orgName>
          <desc>
            <address>
              <addrLine>Hohhot</addrLine>
              <country key="CN"/>
            </address>
          </desc>
          <listRelation>
            <relation active="#struct-440557" type="direct"/>
          </listRelation>
        </org>
        <org type="institution" xml:id="struct-92114" status="OLD">
          <idno type="ROR">https://ror.org/01x3gbx83</idno>
          <orgName>Institut National de la Recherche Agronomique</orgName>
          <orgName type="acronym">INRA</orgName>
          <date type="start">1946-05-18</date>
          <date type="end">2019-12-31</date>
          <desc>
            <address>
              <country key="FR"/>
            </address>
            <ref type="url">http://www.inra.fr</ref>
          </desc>
        </org>
        <org type="regrouplaboratory" xml:id="struct-300421" status="VALID">
          <idno type="ROR">https://ror.org/03m3gzv89</idno>
          <orgName>École nationale vétérinaire de Toulouse</orgName>
          <orgName type="acronym">ENVT</orgName>
          <desc>
            <address>
              <addrLine>23 chemin des Capelles - 31076 Toulouse Cedex</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">https://envt.fr/</ref>
          </desc>
          <listRelation>
            <relation active="#struct-448187" type="direct"/>
            <relation active="#struct-443875" type="indirect"/>
          </listRelation>
        </org>
        <org type="institution" xml:id="struct-448187" status="VALID">
          <idno type="IdRef">026388820</idno>
          <idno type="ISNI">0000000121766169</idno>
          <idno type="ROR">https://ror.org/033p9g875</idno>
          <orgName>Institut National Polytechnique (Toulouse)</orgName>
          <orgName type="acronym">Toulouse INP</orgName>
          <desc>
            <address>
              <country key="FR"/>
            </address>
            <ref type="url">https://www.inp-toulouse.fr/</ref>
          </desc>
          <listRelation>
            <relation active="#struct-443875" type="direct"/>
          </listRelation>
        </org>
        <org type="regroupinstitution" xml:id="struct-443875" status="VALID">
          <idno type="ROR">https://ror.org/017tgbk05</idno>
          <orgName>Communauté d'universités et établissements de Toulouse</orgName>
          <orgName type="acronym">Comue de Toulouse</orgName>
          <desc>
            <address>
              <addrLine>41 Allée Jules Guesde, 31000 Toulouse</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">https://www.univ-toulouse.fr/</ref>
          </desc>
        </org>
        <org type="institution" xml:id="struct-356395" status="VALID">
          <idno type="ROR">https://ror.org/04qw24q55</idno>
          <orgName>Wageningen University and Research [Wageningen]</orgName>
          <orgName type="acronym">WUR</orgName>
          <desc>
            <address>
              <addrLine>Droevendaalsesteeg 4, 6708 PB Wageningen</addrLine>
              <country key="NL"/>
            </address>
            <ref type="url">http://www.wageningenur.nl/</ref>
          </desc>
        </org>
        <org type="institution" xml:id="struct-239582" status="VALID">
          <idno type="ROR">https://ror.org/034t30j35</idno>
          <orgName>Chinese Academy of Sciences [Changchun Branch]</orgName>
          <orgName type="acronym">CAS</orgName>
          <desc>
            <address>
              <addrLine>52 Sanlihe Rd. - Xicheng District - Beijing, China 100864</addrLine>
              <country key="CN"/>
            </address>
            <ref type="url">http://english.cas.cn/</ref>
          </desc>
        </org>
        <org type="institution" xml:id="struct-300572" status="VALID">
          <idno type="ROR">https://ror.org/04pp8hn57</idno>
          <orgName>Universiteit Utrecht / Utrecht University [Utrecht]</orgName>
          <desc>
            <address>
              <addrLine>Heidelberglaan 8, 3584 CS Utrecht</addrLine>
              <country key="NL"/>
            </address>
            <ref type="url">http://www.uu.nl/en</ref>
          </desc>
        </org>
        <org type="institution" xml:id="struct-361864" status="INCOMING">
          <orgName>Malaysian Agricultural Research Development Institute</orgName>
          <desc>
            <address>
              <country key="FR"/>
            </address>
          </desc>
        </org>
        <org type="institution" xml:id="struct-361333" status="INCOMING">
          <orgName>AgResearch</orgName>
          <desc>
            <address>
              <country key="FR"/>
            </address>
          </desc>
        </org>
        <org type="institution" xml:id="struct-148117" status="VALID">
          <idno type="IdRef">139408088</idno>
          <idno type="ROR">https://ror.org/02kbmgc12</idno>
          <orgName>AgroParisTech</orgName>
          <date type="start">2007-01-01</date>
          <desc>
            <address>
              <addrLine>22 place de l'Agronomie CS 20040 91123 Palaiseau cedex</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">https://www.agroparistech.fr/</ref>
          </desc>
        </org>
        <org type="regroupinstitution" xml:id="struct-34256" status="VALID">
          <idno type="ROR">https://ror.org/04k031t90</idno>
          <orgName>École nationale vétérinaire d'Alfort</orgName>
          <orgName type="acronym">ENVA</orgName>
          <desc>
            <address>
              <addrLine>7 avenue du Général de Gaulle - 94700 Maisons-Alfort</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">http://www.vet-alfort.fr/</ref>
          </desc>
        </org>
        <org type="regroupinstitution" xml:id="struct-441569" status="VALID">
          <idno type="IdRef">02636817X</idno>
          <idno type="ISNI">0000000122597504</idno>
          <idno type="ROR">https://ror.org/02feahw73</idno>
          <orgName>Centre National de la Recherche Scientifique</orgName>
          <orgName type="acronym">CNRS</orgName>
          <date type="start">1939-10-19</date>
          <desc>
            <address>
              <country key="FR"/>
            </address>
            <ref type="url">https://www.cnrs.fr/</ref>
          </desc>
        </org>
        <org type="institution" xml:id="struct-361865" status="INCOMING">
          <orgName>Virginia State University</orgName>
          <desc>
            <address>
              <country key="FR"/>
            </address>
          </desc>
        </org>
        <org type="institution" xml:id="struct-440557" status="VALID">
          <idno type="ROR">https://ror.org/015d0jq83</idno>
          <orgName>Inner Mongolia Agricultural University</orgName>
          <orgName type="acronym">IMAU</orgName>
          <desc>
            <address>
              <addrLine>306 Zhaowuda Rd, Saihan, Hohhot, Inner Mongolia, Chine</addrLine>
              <country key="CN"/>
            </address>
          </desc>
        </org>
      </listOrg>
    </back>
  </text>
</TEI>