Disordered solids exhibit unusual properties of their vibrational states and thermal conductivities. Recent progresses have well established the concept of "elastic heterogeneity", i.e., disordered materials show spatially inhomogeneous elastic moduli. In this study, by using molecular-dynamics simulations, we gradually introduce "disorder" into a numerical system to control its modulus heterogeneity. The system starts from a perfect crystalline state, progressively transforms into an increasingly disordered crystalline state, and finally undergoes structural amorphisation. We monitor independently the elastic heterogeneity, the vibrational states, and the thermal conductivity across this transition, and show that the heterogeneity in elastic moduli is well correlated to vibrational and thermal anomalies of the disordered system.