We present in this paper a new method of analysis and decomposition of handwritten documents into glyphs (graphemes) and their associated code book. The different techniques that are involved in this paper are inspired by image processing methods in a large sense and mathematical models implying graph coloring. Our approaches provide firstly a rapid and detailed characterization of handwritten shapes based on dynamic tracking of the handwriting (curvature, thickness, direction, etc.) and also a very efficient analysis method for the categorization of basic shapes (graphemes). The tools that we have produced enable paleographers to study quickly and more accurately a large volume of manuscripts and to extract a large number of characteristics that are specific to an individual or an era.