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Journal Articles Fungal Genetics and Biology Year : 2009

The 2008 update of the Aspergillus nidulans genome annotation: a community effort.

Jennifer Russo Wortman , Jane Mabey Gilsenan , Vinita Joardar , Jennifer Deegan , John Clutterbuck , Mikael R Andersen , David Archer , Mojca Bencina , Gerhard Braus , Pedro Coutinho , Hans von Döhren , John Doonan , Arnold J M Driessen , Pawel Durek , Eduardo Espeso , Erzsébet Fekete , Michel Flipphi (1, 2) , Carlos Garcia Estrada , Steven Geysens , Gustavo Goldman , Piet W J de Groot , Kim Hansen , Steven D Harris , Thorsten Heinekamp , Kerstin Helmstaedt , Bernard Henrissat , Gerald Hofmann , Tim Homan , Tetsuya Horio , Hiroyuki Horiuchi , Steve James , Meriel Jones , Levente Karaffa , Zsolt Karányi , Masashi Kato , Nancy Keller , Diane E Kelly , Jan a K W Kiel , Jung-Mi Kim , Ida J van Der Klei , Frans M Klis , Andriy Kovalchuk , Nada Krasevec , Christian P Kubicek , Bo Liu , Andrew Maccabe , Vera Meyer , Pete Mirabito , Márton Miskei , Magdalena Mos , Jonathan Mullins , David R Nelson , Jens Nielsen , Berl R Oakley , Stephen A Osmani , Tiina Pakula , Andrzej Paszewski , Ian T. Paulsen , Sebastian Pilsyk , István Pócsi , Peter J Punt , Arthur F J Ram , Qinghu Ren , Xavier Robellet (1) , Geoff Robson , Bernhard Seiboth , Piet van Solingen , Thomas Specht , Jibin Sun , Naimeh Taheri-Talesh , Norio Takeshita , Dave Ussery , Patricia A Vankuyk , Hans Visser , Peter J I van de Vondervoort , Ronald P de Vries , Jonathan Walton , Xin Xiang , Yi Xiong , an Ping Zeng , Bernd W Brandt , Michael J Cornell , Cees a M J J van den Hondel , Jacob Visser , Stephen G Oliver , Geoffrey Turner
Jennifer Russo Wortman
  • Function : Author
Jane Mabey Gilsenan
  • Function : Author
Vinita Joardar
  • Function : Author
Jennifer Deegan
  • Function : Author
John Clutterbuck
  • Function : Author
Mikael R Andersen
  • Function : Author
David Archer
  • Function : Author
Mojca Bencina
  • Function : Author
Gerhard Braus
Pedro Coutinho
  • Function : Author
Hans von Döhren
  • Function : Author
John Doonan
  • Function : Author
Arnold J M Driessen
  • Function : Author
Pawel Durek
  • Function : Author
Eduardo Espeso
  • Function : Author
Erzsébet Fekete
  • Function : Author
Carlos Garcia Estrada
  • Function : Author
Steven Geysens
  • Function : Author
Gustavo Goldman
Piet W J de Groot
  • Function : Author
Kim Hansen
  • Function : Author
Steven D Harris
  • Function : Author
Thorsten Heinekamp
  • Function : Author
Kerstin Helmstaedt
  • Function : Author
Bernard Henrissat
  • Function : Author
  • PersonId : 833340
Gerald Hofmann
  • Function : Author
Tim Homan
  • Function : Author
Tetsuya Horio
  • Function : Author
Hiroyuki Horiuchi
  • Function : Author
Steve James
  • Function : Author
Meriel Jones
  • Function : Author
Levente Karaffa
  • Function : Author
Zsolt Karányi
  • Function : Author
Masashi Kato
  • Function : Author
Nancy Keller
  • Function : Author
Diane E Kelly
  • Function : Author
Jan a K W Kiel
  • Function : Author
Jung-Mi Kim
  • Function : Author
Ida J van Der Klei
  • Function : Author
Frans M Klis
  • Function : Author
Andriy Kovalchuk
  • Function : Author
Nada Krasevec
  • Function : Author
Christian P Kubicek
  • Function : Author
Bo Liu
  • Function : Author
Andrew Maccabe
  • Function : Author
Vera Meyer
  • Function : Author
Pete Mirabito
  • Function : Author
Márton Miskei
  • Function : Author
Magdalena Mos
  • Function : Author
Jonathan Mullins
  • Function : Author
David R Nelson
  • Function : Author
Jens Nielsen
Berl R Oakley
  • Function : Author
Stephen A Osmani
  • Function : Author
Tiina Pakula
  • Function : Author
Andrzej Paszewski
  • Function : Author
Ian T. Paulsen
  • Function : Author
Sebastian Pilsyk
  • Function : Author
István Pócsi
  • Function : Author
Peter J Punt
  • Function : Author
Arthur F J Ram
  • Function : Author
Qinghu Ren
  • Function : Author
Geoff Robson
  • Function : Author
Bernhard Seiboth
  • Function : Author
Piet van Solingen
  • Function : Author
Thomas Specht
  • Function : Author
Jibin Sun
  • Function : Author
Naimeh Taheri-Talesh
  • Function : Author
Norio Takeshita
  • Function : Author
Dave Ussery
  • Function : Author
Patricia A Vankuyk
  • Function : Author
Hans Visser
  • Function : Author
Peter J I van de Vondervoort
  • Function : Author
Ronald P de Vries
  • Function : Author
Jonathan Walton
  • Function : Author
Xin Xiang
  • Function : Author
Yi Xiong
  • Function : Author
an Ping Zeng
  • Function : Author
Bernd W Brandt
  • Function : Author
Michael J Cornell
  • Function : Author
Cees a M J J van den Hondel
  • Function : Author
Jacob Visser
  • Function : Author
Stephen G Oliver
  • Function : Author
Geoffrey Turner
  • Function : Author

Abstract

The identification and annotation of protein-coding genes is one of the primary goals of whole-genome sequencing projects, and the accuracy of predicting the primary protein products of gene expression is vital to the interpretation of the available data and the design of downstream functional applications. Nevertheless, the comprehensive annotation of eukaryotic genomes remains a considerable challenge. Many genomes submitted to public databases, including those of major model organisms, contain significant numbers of wrong and incomplete gene predictions. We present a community-based reannotation of the Aspergillus nidulans genome with the primary goal of increasing the number and quality of protein functional assignments through the careful review of experts in the field of fungal biology.

Dates and versions

hal-00418937 , version 1 (22-09-2009)

Identifiers

Cite

Jennifer Russo Wortman, Jane Mabey Gilsenan, Vinita Joardar, Jennifer Deegan, John Clutterbuck, et al.. The 2008 update of the Aspergillus nidulans genome annotation: a community effort.. Fungal Genetics and Biology, 2009, 46 Suppl 1, pp.S2-13. ⟨10.1016/j.fgb.2008.12.003⟩. ⟨hal-00418937⟩
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