From MIN model to ordinary differential equations - Archive ouverte HAL
Article Dans Une Revue Journal of Integrative Bioinformatics Année : 2007

From MIN model to ordinary differential equations

Raymond Devillers
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François Képès
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Résumé

Biological interaction networks can be modeled using the Modular Interaction Network (MIN) formalism, which provides an intermediary modeling level between the biological and mathematical ones. MIN focuses on a simple but structured and versatile representation of biological knowledge, without targeting a particular analysis or simulation technique. In this paper, we propose a translation procedure which, starting from a MIN specification of a biological system, generates its representation in ordinary differential equations (ODEs) allowing to study the dynamics of the system. The translation is illustrated on a classical benchmark: the lambda phage genetic switch.
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Dates et versions

hal-00340132 , version 1 (20-11-2008)

Identifiants

  • HAL Id : hal-00340132 , version 1

Citer

Anastasia Yartseva, Hanna Klaudel, Raymond Devillers, François Képès. From MIN model to ordinary differential equations. Journal of Integrative Bioinformatics, 2007, 4, pp.1--12. ⟨hal-00340132⟩
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