Pattern Matching in Protein-Protein Interaction Graphs - Archive ouverte HAL
Communication Dans Un Congrès Année : 2007

Pattern Matching in Protein-Protein Interaction Graphs

Résumé

In the context of comparative analysis of protein-protein interaction graphs, we use a graph-based formalism to detect the preservation of a given protein complex (pattern graph) in the protein-protein interaction graph (target graph) of another species with respect to (w.r.t.) orthologous proteins. We give an efficient exponential-time randomized algorithm in case the occurrence of the pattern graph in the target graph is required to be exact. For approximate occurrences, we prove a tight inapproximability results and give four approximation algorithms that deal with bounded degree graphs, small ortholog numbers, linear forests and very simple yet hard instances, respectively.
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Dates et versions

hal-00199009 , version 1 (18-12-2007)

Identifiants

Citer

Gaëlle Brevier-Giberti, Roméo Rizzi, Stéphane Vialette. Pattern Matching in Protein-Protein Interaction Graphs. FCT 2007, Aug 2007, Budapest, Hungary. pp.137-148, ⟨10.1007/978-3-540-74240-1_13⟩. ⟨hal-00199009⟩
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