Appendix 3.1.
Putative strong promoters harbouring an UP element, identified under CI constraints in Escherichia coli genome
/gene/ galP?0 1
/5'UTR length/ 142
/global error score/ 5.4
/UP left errors/ 2
/UP right errors/ 2
/errors (-35 box)/ 2
/errors (-10 box)/ 1
/errors (SD box)/ 0
/distance UP,-35 box/ 5
/distance -35 box,-10 box/ 17
/distance -10 box, Shine-Dalgarno/ 140
/distance Shine-Dalgarno, start codon/ 5
/positions for UP w.r.t. +1 transcript./ -63 -42
/positions for -35 box w.r.t. +1 transcript./ -36 -32
/positions for -10 box w.r.t. +1 transcript./ -14 -9
/positions for Shine-Dalgarno box w.r.t. +1 transcript./ 133 137
/position for start codon w.r.t. +1 transcript./ 143
/UP left box/ ttacatttctt
/UP right box/ ttcagtaaagt
/-35 box/ ttgca
/tataBox/ tatgat
/Shine-Dalgarno box/ ggagg
/start codon/ atg
/leftContext Shine-Dalgarno box/ atatt
/rightContext Shine-Dalgarno box/ gcatc
/leftContextStartCodon/ gcatc
/rightContextStartCodon/ cctga
/complement/ forward
/location UP element/ 3086098 3086119
/location -35 box/ 3086125 3086129
/location -10 box/ 3086147 3086152
/location +1 transcr/ 3086161
/location start codon/ 3086303
tcaattattttcatgcacttaaatcataactaagataaatgttagtgtaagcgattacactgatgtgatttgcttcacatctttttacgtcgtactcacctatcttaattcacaataaaaaataaccatattggagggcatcatgcctgacg 
/gene/ glgS?0 1
/5'UTR length/ 180
/global error score/ 9.4
/UP left errors/ 2
/UP right errors/ 1
/errors (-35 box)/ 2
/errors (-10 box)/ 1
/errors (SD box)/ 0
/distance UP,-35 box/ 3
/distance -35 box,-10 box/ 16
/distance -10 box, Shine-Dalgarno/ 175
/distance Shine-Dalgarno, start codon/ 8
/positions for UP w.r.t. +1 transcript./ -60 -39
/positions for -35 box w.r.t. +1 transcript./ -35 -31
/positions for -10 box w.r.t. +1 transcript./ -14 -9
/positions for Shine-Dalgarno box w.r.t. +1 transcript./ 168 172
/position for start codon w.r.t. +1 transcript./ 181
/UP left box/ caatatttact
/UP right box/ ttgtaatagtt
/-35 box/ ttgct
/tataBox/ aataat
/Shine-Dalgarno box/ ggagg
/start codon/ atg
/leftContext Shine-Dalgarno box/ taacc
/rightContext Shine-Dalgarno box/ atgtg
/leftContextStartCodon/ tgctt
/rightContextStartCodon/ gatca
/complement/ reverse
/location UP element/ 3190195 3190174
/location -35 box/ 3190170 3190166
/location -10 box/ 3190149 3190144
/location +1 transcr/ 3190135
/location start codon/ 3189955
ttagagaagttctggaagagaaagtcttttaatatggttttttatttttcactaaaaagtgtgatcggggacaatatatttacgcacgttatgtttaaaggcactacactgattggggaatactgaaatcagaaaaagcatatggccttaaaaggtatgcgataaccggaggatgtgcttatggatcata 
/gene/ ybcN?0 1
/5'UTR length/ 145
/global error score/ 32.0
/UP left errors/ 2
/UP right errors/ 2
/errors (-35 box)/ 1
/errors (-10 box)/ 1
/errors (SD box)/ 0
/distance UP,-35 box/ 14
/distance -35 box,-10 box/ 18
/distance -10 box, Shine-Dalgarno/ 142
/distance Shine-Dalgarno, start codon/ 6
/positions for UP w.r.t. +1 transcript./ -73 -52
/positions for -35 box w.r.t. +1 transcript./ -37 -33
/positions for -10 box w.r.t. +1 transcript./ -14 -9
/positions for Shine-Dalgarno box w.r.t. +1 transcript./ 135 139
/position for start codon w.r.t. +1 transcript./ 146
/UP left box/ gtaaaagtgtt
/UP right box/ ttaagaaggag
/-35 box/ ttgat
/tataBox/ cataat
/Shine-Dalgarno box/ ggagg
/start codon/ gtg
/leftContext Shine-Dalgarno box/ tctgc
/rightContext Shine-Dalgarno box/ ggaag
/leftContextStartCodon/ gaagc
/rightContextStartCodon/ aacct
/complement/ forward
/location UP element/ 571471 571492
/location -35 box/ 571507 571511
/location -10 box/ 571530 571535
/location +1 transcr/ 571544
/location start codon/ 571689
cggagcctgaacaactccggtgacttctgcgctaaacggggacgtttatgcgcacatacaatccaaactctcttctcccttcacagatgcagaaatgcacctgcaattctttgcatctagcgtttgacctctgcggaggggaagcgtgaacctct