<?xml version="1.0" encoding="utf-8"?>
<TEI xmlns="http://www.tei-c.org/ns/1.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:hal="http://hal.archives-ouvertes.fr/" xmlns:gml="http://www.opengis.net/gml/3.3/" xmlns:gmlce="http://www.opengis.net/gml/3.3/ce" version="1.1" xsi:schemaLocation="http://www.tei-c.org/ns/1.0 http://api.archives-ouvertes.fr/documents/aofr-sword.xsd">
  <teiHeader>
    <fileDesc>
      <titleStmt>
        <title>HAL TEI export of cea-01880286</title>
      </titleStmt>
      <publicationStmt>
        <distributor>CCSD</distributor>
        <availability status="restricted">
          <licence target="https://creativecommons.org/publicdomain/zero/1.0/">CC0 1.0 - Universal</licence>
        </availability>
        <date when="2026-05-13T03:41:18+02:00"/>
      </publicationStmt>
      <sourceDesc>
        <p part="N">HAL API Platform</p>
      </sourceDesc>
    </fileDesc>
  </teiHeader>
  <text>
    <body>
      <listBibl>
        <biblFull>
          <titleStmt>
            <title xml:lang="en">Parallels between experimental and natural evolution of legume symbionts</title>
            <author role="aut">
              <persName>
                <forename type="first">Camille</forename>
                <surname>Clerissi</surname>
              </persName>
              <email type="md5">ae405383e2fb9a0051ce6570a1814689</email>
              <email type="domain">ephe.psl.eu</email>
              <idno type="idhal" notation="string">camille-clerissi</idno>
              <idno type="idhal" notation="numeric">171571</idno>
              <idno type="halauthorid" notation="string">24045-171571</idno>
              <idno type="ORCID">https://orcid.org/0000-0002-5624-2821</idno>
              <idno type="GOOGLE SCHOLAR">https://scholar.google.fr/citations?user=aZOJTEwAAAAJ&amp;hl=fr</idno>
              <idno type="IDREF">https://www.idref.fr/170001105</idno>
              <affiliation ref="#struct-412430"/>
              <affiliation ref="#struct-195716"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Marie</forename>
                <surname>Touchon</surname>
              </persName>
              <email type="md5">be65765ba05086aec1d6513e133bdd6a</email>
              <email type="domain">pasteur.fr</email>
              <idno type="idhal" notation="string">marie-touchon</idno>
              <idno type="idhal" notation="numeric">178489</idno>
              <idno type="halauthorid" notation="string">5226-178489</idno>
              <idno type="ORCID">https://orcid.org/0000-0001-7389-447X</idno>
              <idno type="IDREF">https://www.idref.fr/094340374</idno>
              <affiliation ref="#struct-412430"/>
              <affiliation ref="#struct-195716"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Delphine</forename>
                <surname>Capela</surname>
              </persName>
              <email type="md5">b3430b77c1fdfbee31f6dd2c8011dd96</email>
              <email type="domain">inrae.fr</email>
              <idno type="idhal" notation="string">delphine-capela</idno>
              <idno type="idhal" notation="numeric">739703</idno>
              <idno type="halauthorid" notation="string">49906-739703</idno>
              <idno type="ORCID">https://orcid.org/0000-0003-3891-672X</idno>
              <idno type="IDREF">https://www.idref.fr/063049392</idno>
              <idno type="VIAF">https://viaf.org/viaf/189487072</idno>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Mingxing</forename>
                <surname>Tang</surname>
              </persName>
              <email type="md5">de11e479be8c22b249079e6b6b689461</email>
              <email type="domain">inra.fr</email>
              <idno type="idhal" notation="numeric">1205707</idno>
              <idno type="halauthorid" notation="string">1426741-1205707</idno>
              <affiliation ref="#struct-530"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Stéphane</forename>
                <surname>Cruveiller</surname>
              </persName>
              <email type="md5">bc682191f5b7c4f16e28bb4d803b1b98</email>
              <email type="domain">univ-evry.fr</email>
              <idno type="idhal" notation="numeric">1361922</idno>
              <idno type="halauthorid" notation="string">195094-1361922</idno>
              <idno type="ORCID">https://orcid.org/0000-0002-2342-9729</idno>
              <idno type="IDREF">https://www.idref.fr/073646148</idno>
              <idno type="VIAF">https://viaf.org/viaf/213059044</idno>
              <idno type="ISNI">http://isni.org/isni/000000014019467X</idno>
              <affiliation ref="#struct-427676"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Matthew</forename>
                <surname>Parker</surname>
              </persName>
              <idno type="halauthorid">181614-0</idno>
              <affiliation ref="#struct-325206"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Lionel</forename>
                <surname>Moulin</surname>
              </persName>
              <email type="md5">684b25c8566cf90d5d99f8f14cfa20dd</email>
              <email type="domain">ird.fr</email>
              <idno type="idhal" notation="string">lionelmoulin</idno>
              <idno type="idhal" notation="numeric">1151463</idno>
              <idno type="halauthorid" notation="string">209240-1151463</idno>
              <idno type="RESEARCHERID">http://www.researcherid.com/rid/C-2921-2008</idno>
              <idno type="ORCID">https://orcid.org/0000-0001-9068-6912</idno>
              <idno type="IDREF">https://www.idref.fr/070326444</idno>
              <idno type="RESEARCHERID">http://www.researcherid.com/rid/http://www.researcherid.com/rid/C-2921-2008</idno>
              <affiliation ref="#struct-421268"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Catherine</forename>
                <surname>Masson-Boivin</surname>
              </persName>
              <email type="md5">168bbdc0bf17f090475863a322dee728</email>
              <email type="domain">inrae.fr</email>
              <idno type="idhal" notation="numeric">1136582</idno>
              <idno type="halauthorid" notation="string">1063741-1136582</idno>
              <idno type="IDREF">https://www.idref.fr/070326665</idno>
              <idno type="VIAF">https://viaf.org/viaf/205927346</idno>
              <idno type="ORCID">https://orcid.org/0000-0002-3506-3808</idno>
              <affiliation ref="#struct-530"/>
            </author>
            <author role="crp">
              <persName>
                <forename type="first">Eduardo</forename>
                <forename type="middle">P C</forename>
                <surname>Rocha</surname>
              </persName>
              <email type="md5">81ebd616123ad6c7dc179b3b98db2e41</email>
              <email type="domain">pasteur.fr</email>
              <idno type="idhal" notation="string">epcrocha</idno>
              <idno type="idhal" notation="numeric">184966</idno>
              <idno type="halauthorid" notation="string">1063732-184966</idno>
              <idno type="ORCID">https://orcid.org/0000-0001-7704-822X</idno>
              <idno type="IDREF">https://www.idref.fr/066829178</idno>
              <affiliation ref="#struct-412430"/>
              <affiliation ref="#struct-195716"/>
            </author>
            <editor role="depositor">
              <persName>
                <forename>Bruno</forename>
                <surname>Savelli</surname>
              </persName>
              <email type="md5">582f92ffece0afd20bf72539885be813</email>
              <email type="domain">cea.fr</email>
            </editor>
            <funder ref="#projanr-34965"/>
            <funder ref="#projanr-44401"/>
            <funder ref="#projanr-37939"/>
            <funder ref="#projanr-49191"/>
            <funder>French National Research Agency : ANR-12-ADAP-0014-01, ANR-16-CE20-0011-01 ; the "Laboratoire d'Excellence (LABEX)" TULIP : ANR-10-LABX-41 ; France Genomique National infrastructure - "Investissement d'avenir" program : ANR-10-INBS-09</funder>
          </titleStmt>
          <editionStmt>
            <edition n="v1" type="current">
              <date type="whenSubmitted">2018-09-25 15:39:14</date>
              <date type="whenModified">2026-05-12 17:02:04</date>
              <date type="whenReleased">2018-09-25 15:55:53</date>
              <date type="whenProduced">2018-06-11</date>
              <date type="whenEndEmbargoed">2018-09-25</date>
              <ref type="file" target="https://cea.hal.science/cea-01880286v1/document">
                <date notBefore="2018-09-25"/>
              </ref>
              <ref type="file" subtype="publisherPaid" n="1" target="https://cea.hal.science/cea-01880286v1/file/s41467-018-04778-5.pdf" id="file-1881234-1909820">
                <date notBefore="2018-09-25"/>
              </ref>
              <ref type="externalLink" target="https://doi.org/10.1038/s41467-018-04778-5"/>
              <fs>
                <f name="inra_publicVise_local" notation="string" n="SC">
                  <string>inra_publicVise_local_SC</string>
                </f>
              </fs>
            </edition>
            <respStmt>
              <resp>contributor</resp>
              <name key="178875">
                <persName>
                  <forename>Bruno</forename>
                  <surname>Savelli</surname>
                </persName>
                <email type="md5">582f92ffece0afd20bf72539885be813</email>
                <email type="domain">cea.fr</email>
              </name>
            </respStmt>
          </editionStmt>
          <publicationStmt>
            <distributor>CCSD</distributor>
            <idno type="halId">cea-01880286</idno>
            <idno type="halUri">https://cea.hal.science/cea-01880286</idno>
            <idno type="halBibtex">clerissi:cea-01880286</idno>
            <idno type="halRefHtml">&lt;i&gt;Nature Communications&lt;/i&gt;, 2018, 9 (1), pp.2264. &lt;a target="_blank" href="https://dx.doi.org/10.1038/s41467-018-04778-5"&gt;&amp;#x27E8;10.1038/s41467-018-04778-5&amp;#x27E9;&lt;/a&gt;</idno>
            <idno type="halRef">Nature Communications, 2018, 9 (1), pp.2264. &amp;#x27E8;10.1038/s41467-018-04778-5&amp;#x27E9;</idno>
            <availability status="restricted">
              <licence target="https://creativecommons.org/licenses/by/4.0/">CC BY 4.0 - Attribution<ref corresp="#file-1881234-1909820"/></licence>
            </availability>
          </publicationStmt>
          <seriesStmt>
            <idno type="stamp" n="IRD">IRD - Institut de recherche pour le développement</idno>
            <idno type="stamp" n="CIRAD">CIRAD - Centre de coopération internationale en recherche agronomique pour le développement</idno>
            <idno type="stamp" n="PASTEUR">Institut Pasteur</idno>
            <idno type="stamp" n="CEA">CEA - Commissariat à l'énergie atomique</idno>
            <idno type="stamp" n="CNRS">CNRS - Centre national de la recherche scientifique</idno>
            <idno type="stamp" n="UNIV-EVRY">Université d'Evry-Val d'Essonne</idno>
            <idno type="stamp" n="INRA">INRA - Institut national de la recherche agronomique</idno>
            <idno type="stamp" n="CEA-UPSAY" corresp="CEA">CEA - Université Paris-Saclay</idno>
            <idno type="stamp" n="GENOMIQUE-METABOLIQUE" corresp="UNIV-EVRY">Génomique Métabolique</idno>
            <idno type="stamp" n="UNIV-PARIS-SACLAY">Université Paris-Saclay</idno>
            <idno type="stamp" n="AGREENIUM">Archive ouverte en agrobiosciences</idno>
            <idno type="stamp" n="UNIV-EVRY-SACLAY" corresp="UNIV-PARIS-SACLAY">UNIV-EVRY-SACLAY</idno>
            <idno type="stamp" n="CEA-UPSAY-SACLAY" corresp="CEA">CEA-UPSAY-SACLAY</idno>
            <idno type="stamp" n="BA">Biologie-AgroSciences</idno>
            <idno type="stamp" n="UNIV-MONTPELLIER">Université de Montpellier</idno>
            <idno type="stamp" n="JACOB" corresp="CEA">Institut de Biologie François JACOB</idno>
            <idno type="stamp" n="CEA-DRF" corresp="CEA">Direction de Recherche Fondamentale</idno>
            <idno type="stamp" n="GENOSCOPE" corresp="CEA">Génoscope-CNS</idno>
            <idno type="stamp" n="INRAE">Institut National de Recherche en Agriculture, Alimentation et Environnement</idno>
            <idno type="stamp" n="TEST-HALCNRS">Collection test HAL CNRS</idno>
            <idno type="stamp" n="GENETIQUE_ANIMALE">Département GA INRAE</idno>
            <idno type="stamp" n="ANR">ANR</idno>
            <idno type="stamp" n="GS-BIOSPHERA">Graduate School Biologie, Société, Ecologie &amp; Environnement, Ressources, Agriculture &amp; Alimentation</idno>
            <idno type="stamp" n="INRAEOCCITANIETOULOUSE" corresp="INRAE">INRAE Occitanie Toulouse</idno>
            <idno type="stamp" n="UM-2015-2021" corresp="UNIV-MONTPELLIER">Université de Montpellier (2015-2021)</idno>
            <idno type="stamp" n="LIPME">Laboratoire des Interactions Plantes Microbes Environnement</idno>
            <idno type="stamp" n="MICROBIAL-EVOLUTIONARY-GENOMICS" corresp="PASTEUR">Génomique évolutive des microbes</idno>
            <idno type="stamp" n="UMR3525" corresp="PASTEUR">Génétique des génomes</idno>
            <idno type="stamp" n="MICROSCOPE" corresp="CEA">Microbial Genome Annotation &amp; Analysis Platform (MAGE)</idno>
            <idno type="stamp" n="APT_TEST">APT_TEST</idno>
            <idno type="stamp" n="PHIM">Plant Health Institute of Montpellier</idno>
          </seriesStmt>
          <notesStmt>
            <note type="commentary">Author Correction: Parallels between experimental and natural evolution of legume symbionts. WOS:000449070200003 ; DOI: 10.1038/s41467-018-07205-x Clémence Genthon and Céline Lopez-Roques, who performed sequencing, were inadvertently omitted from the author list. This has now been corrected in the PDF and HTML versions of the Article</note>
            <note type="audience" n="2">International</note>
            <note type="popular" n="0">No</note>
            <note type="peer" n="1">Yes</note>
          </notesStmt>
          <sourceDesc>
            <biblStruct>
              <analytic>
                <title xml:lang="en">Parallels between experimental and natural evolution of legume symbionts</title>
                <author role="aut">
                  <persName>
                    <forename type="first">Camille</forename>
                    <surname>Clerissi</surname>
                  </persName>
                  <email type="md5">ae405383e2fb9a0051ce6570a1814689</email>
                  <email type="domain">ephe.psl.eu</email>
                  <idno type="idhal" notation="string">camille-clerissi</idno>
                  <idno type="idhal" notation="numeric">171571</idno>
                  <idno type="halauthorid" notation="string">24045-171571</idno>
                  <idno type="ORCID">https://orcid.org/0000-0002-5624-2821</idno>
                  <idno type="GOOGLE SCHOLAR">https://scholar.google.fr/citations?user=aZOJTEwAAAAJ&amp;hl=fr</idno>
                  <idno type="IDREF">https://www.idref.fr/170001105</idno>
                  <affiliation ref="#struct-412430"/>
                  <affiliation ref="#struct-195716"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Marie</forename>
                    <surname>Touchon</surname>
                  </persName>
                  <email type="md5">be65765ba05086aec1d6513e133bdd6a</email>
                  <email type="domain">pasteur.fr</email>
                  <idno type="idhal" notation="string">marie-touchon</idno>
                  <idno type="idhal" notation="numeric">178489</idno>
                  <idno type="halauthorid" notation="string">5226-178489</idno>
                  <idno type="ORCID">https://orcid.org/0000-0001-7389-447X</idno>
                  <idno type="IDREF">https://www.idref.fr/094340374</idno>
                  <affiliation ref="#struct-412430"/>
                  <affiliation ref="#struct-195716"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Delphine</forename>
                    <surname>Capela</surname>
                  </persName>
                  <email type="md5">b3430b77c1fdfbee31f6dd2c8011dd96</email>
                  <email type="domain">inrae.fr</email>
                  <idno type="idhal" notation="string">delphine-capela</idno>
                  <idno type="idhal" notation="numeric">739703</idno>
                  <idno type="halauthorid" notation="string">49906-739703</idno>
                  <idno type="ORCID">https://orcid.org/0000-0003-3891-672X</idno>
                  <idno type="IDREF">https://www.idref.fr/063049392</idno>
                  <idno type="VIAF">https://viaf.org/viaf/189487072</idno>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Mingxing</forename>
                    <surname>Tang</surname>
                  </persName>
                  <email type="md5">de11e479be8c22b249079e6b6b689461</email>
                  <email type="domain">inra.fr</email>
                  <idno type="idhal" notation="numeric">1205707</idno>
                  <idno type="halauthorid" notation="string">1426741-1205707</idno>
                  <affiliation ref="#struct-530"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Stéphane</forename>
                    <surname>Cruveiller</surname>
                  </persName>
                  <email type="md5">bc682191f5b7c4f16e28bb4d803b1b98</email>
                  <email type="domain">univ-evry.fr</email>
                  <idno type="idhal" notation="numeric">1361922</idno>
                  <idno type="halauthorid" notation="string">195094-1361922</idno>
                  <idno type="ORCID">https://orcid.org/0000-0002-2342-9729</idno>
                  <idno type="IDREF">https://www.idref.fr/073646148</idno>
                  <idno type="VIAF">https://viaf.org/viaf/213059044</idno>
                  <idno type="ISNI">http://isni.org/isni/000000014019467X</idno>
                  <affiliation ref="#struct-427676"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Matthew</forename>
                    <surname>Parker</surname>
                  </persName>
                  <idno type="halauthorid">181614-0</idno>
                  <affiliation ref="#struct-325206"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Lionel</forename>
                    <surname>Moulin</surname>
                  </persName>
                  <email type="md5">684b25c8566cf90d5d99f8f14cfa20dd</email>
                  <email type="domain">ird.fr</email>
                  <idno type="idhal" notation="string">lionelmoulin</idno>
                  <idno type="idhal" notation="numeric">1151463</idno>
                  <idno type="halauthorid" notation="string">209240-1151463</idno>
                  <idno type="RESEARCHERID">http://www.researcherid.com/rid/C-2921-2008</idno>
                  <idno type="ORCID">https://orcid.org/0000-0001-9068-6912</idno>
                  <idno type="IDREF">https://www.idref.fr/070326444</idno>
                  <idno type="RESEARCHERID">http://www.researcherid.com/rid/http://www.researcherid.com/rid/C-2921-2008</idno>
                  <affiliation ref="#struct-421268"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Catherine</forename>
                    <surname>Masson-Boivin</surname>
                  </persName>
                  <email type="md5">168bbdc0bf17f090475863a322dee728</email>
                  <email type="domain">inrae.fr</email>
                  <idno type="idhal" notation="numeric">1136582</idno>
                  <idno type="halauthorid" notation="string">1063741-1136582</idno>
                  <idno type="IDREF">https://www.idref.fr/070326665</idno>
                  <idno type="VIAF">https://viaf.org/viaf/205927346</idno>
                  <idno type="ORCID">https://orcid.org/0000-0002-3506-3808</idno>
                  <affiliation ref="#struct-530"/>
                </author>
                <author role="crp">
                  <persName>
                    <forename type="first">Eduardo</forename>
                    <forename type="middle">P C</forename>
                    <surname>Rocha</surname>
                  </persName>
                  <email type="md5">81ebd616123ad6c7dc179b3b98db2e41</email>
                  <email type="domain">pasteur.fr</email>
                  <idno type="idhal" notation="string">epcrocha</idno>
                  <idno type="idhal" notation="numeric">184966</idno>
                  <idno type="halauthorid" notation="string">1063732-184966</idno>
                  <idno type="ORCID">https://orcid.org/0000-0001-7704-822X</idno>
                  <idno type="IDREF">https://www.idref.fr/066829178</idno>
                  <affiliation ref="#struct-412430"/>
                  <affiliation ref="#struct-195716"/>
                </author>
              </analytic>
              <monogr>
                <idno type="halJournalId" status="VALID">67823</idno>
                <idno type="issn">2041-1723</idno>
                <idno type="eissn">2041-1723</idno>
                <title level="j">Nature Communications</title>
                <imprint>
                  <publisher>Nature Publishing Group</publisher>
                  <biblScope unit="volume">9</biblScope>
                  <biblScope unit="issue">1</biblScope>
                  <biblScope unit="pp">2264</biblScope>
                  <date type="datePub">2018-06-11</date>
                </imprint>
              </monogr>
              <idno type="doi">10.1038/s41467-018-04778-5</idno>
              <idno type="prodinra">432147</idno>
              <idno type="pubmed">29891837</idno>
              <idno type="wos">000434781600004</idno>
            </biblStruct>
          </sourceDesc>
          <profileDesc>
            <langUsage>
              <language ident="en">English</language>
            </langUsage>
            <textClass>
              <classCode scheme="halDomain" n="sdv">Life Sciences [q-bio]</classCode>
              <classCode scheme="halDomain" n="sdv.aen">Life Sciences [q-bio]/Food and Nutrition</classCode>
              <classCode scheme="halTypology" n="ART">Journal articles</classCode>
              <classCode scheme="halOldTypology" n="ART">Journal articles</classCode>
              <classCode scheme="halTreeTypology" n="ART">Journal articles</classCode>
            </textClass>
            <abstract xml:lang="en">
              <p>The emergence of symbiotic interactions has been studied using population genomics in nature and experimental evolution in the laboratory, but the parallels between these processes remain unknown. Here we compare the emergence of rhizobia after the horizontal transfer of a symbiotic plasmid in natural populations of $Cupriavidus\ taiwanensis$, over 10 MY ago, with the experimental evolution of symbiotic $Ralstonia\ solanacearum$ for a few hundred generations. In spite of major differences in terms of time span, environment, genetic background, and phenotypic achievement, both processes resulted in rapid genetic diversification dominated by purifying selection. We observe no adaptation in the plasmid carrying the genes responsible for the ecological transition. Instead, adaptation was associated with positive selection in a set of genes that led to the co-option of the same quorum-sensing system in both processes. Our results provide evidence for similarities in experimental and natural evolutionary transitions and highlight the potential of comparisons between both processes to understand symbiogenesis.</p>
            </abstract>
            <particDesc>
              <org type="consortium">MicroScope Plateform</org>
            </particDesc>
          </profileDesc>
        </biblFull>
      </listBibl>
    </body>
    <back>
      <listOrg type="structures">
        <org type="laboratory" xml:id="struct-412430" status="OLD">
          <idno type="RNSR">201321776T</idno>
          <orgName>Génomique évolutive des Microbes / Microbial Evolutionary Genomics</orgName>
          <date type="end">2021-07-21</date>
          <desc>
            <address>
              <addrLine>Département Génomes et Génétique - 25-28 rue du docteur Roux, F-75724 Paris Cedex 15</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">https://research.pasteur.fr/fr/team/microbial-evolutionary-genomics/</ref>
          </desc>
          <listRelation>
            <relation active="#struct-300027" type="direct"/>
            <relation name="UMR3525" active="#struct-441569" type="direct"/>
          </listRelation>
        </org>
        <org type="regrouplaboratory" xml:id="struct-195716" status="OLD">
          <idno type="RNSR">201220446B</idno>
          <orgName>Génétique des génomes - Genetics of Genomes</orgName>
          <orgName type="acronym">UMR 3525</orgName>
          <date type="start">2000-01-01</date>
          <date type="end">2021-07-21</date>
          <desc>
            <address>
              <addrLine>25-28 rue du Docteur Roux, F-75724 Paris Cedex 15</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">https://research.pasteur.fr/fr/team/genetics-of-genomes/</ref>
          </desc>
          <listRelation>
            <relation active="#struct-300027" type="direct"/>
            <relation name="UMR3525 / URA2171" active="#struct-441569" type="direct"/>
          </listRelation>
        </org>
        <org type="laboratory" xml:id="struct-530" status="OLD">
          <orgName>Laboratoire des interactions plantes micro-organismes</orgName>
          <orgName type="acronym">LIPME</orgName>
          <date type="start">2003-01-01</date>
          <date type="end">2019-12-31</date>
          <desc>
            <address>
              <addrLine>Chemin de Borde-Rouge - BP 27 31326 Castanet Tolosan</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">https://www6.toulouse.inra.fr/lipm</ref>
          </desc>
          <listRelation>
            <relation name="UMR0441" active="#struct-92114" type="direct"/>
            <relation name="UMR2594" active="#struct-441569" type="direct"/>
          </listRelation>
        </org>
        <org type="researchteam" xml:id="struct-427676" status="VALID">
          <orgName>Analyse Bio-Informatique pour la Génomique et le Métabolisme</orgName>
          <orgName type="acronym">LABGeM</orgName>
          <desc>
            <address>
              <country key="FR"/>
            </address>
          </desc>
          <listRelation>
            <relation name="DRF/JACOB" active="#struct-21582" type="direct"/>
            <relation name="DRF/JACOB" active="#struct-55375" type="indirect"/>
            <relation active="#struct-419361" type="indirect"/>
            <relation name="DRF/JACOB" active="#struct-465913" type="indirect"/>
            <relation active="#struct-300016" type="indirect"/>
            <relation active="#struct-300306" type="indirect"/>
            <relation name="UMR8030" active="#struct-441569" type="indirect"/>
          </listRelation>
        </org>
        <org type="institution" xml:id="struct-325206" status="VALID">
          <idno type="ISNI">0000 0001 2164 4508</idno>
          <idno type="ROR">https://ror.org/008rmbt77</idno>
          <orgName>Binghamton University [SUNY]</orgName>
          <date type="start">1946-01-01</date>
          <desc>
            <address>
              <addrLine>Binghamton UniversityState University of New York4400 Vestal Parkway EastBinghamton, NY 13902</addrLine>
              <country key="US"/>
            </address>
            <ref type="url">http://binghamton.edu/</ref>
          </desc>
          <listRelation>
            <relation active="#struct-361557" type="direct"/>
          </listRelation>
        </org>
        <org type="laboratory" xml:id="struct-421268" status="OLD">
          <idno type="RNSR">201119407B</idno>
          <orgName>UMR - Interactions Plantes Microorganismes Environnement</orgName>
          <orgName type="acronym">UMR IPME</orgName>
          <date type="start">2011-01-01</date>
          <date type="end">2020-12-31</date>
          <desc>
            <address>
              <addrLine>IRD France-Sud 911, avenue Agropolis BP 64501 34394 Montpellier cedex 5</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">http://umr-ipme.ird.fr</ref>
          </desc>
          <listRelation>
            <relation name="UMR98" active="#struct-11574" type="direct"/>
            <relation active="#struct-410122" type="direct"/>
            <relation name="UMR186" active="#struct-451860" type="direct"/>
            <relation active="#struct-67872" type="indirect"/>
          </listRelation>
        </org>
        <org type="institution" xml:id="struct-300027" status="VALID">
          <idno type="IdRef">027936643</idno>
          <idno type="ISNI">0000 0001 2353 6535</idno>
          <idno type="ROR">https://ror.org/0495fxg12</idno>
          <orgName>Institut Pasteur [Paris]</orgName>
          <orgName type="acronym">IP</orgName>
          <date type="start">1887-06-04</date>
          <desc>
            <address>
              <addrLine>25-28, rue du docteur Roux, 75724 Paris cedex 15</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">https://www.pasteur.fr</ref>
          </desc>
        </org>
        <org type="regroupinstitution" xml:id="struct-441569" status="VALID">
          <idno type="IdRef">02636817X</idno>
          <idno type="ISNI">0000000122597504</idno>
          <idno type="ROR">https://ror.org/02feahw73</idno>
          <orgName>Centre National de la Recherche Scientifique</orgName>
          <orgName type="acronym">CNRS</orgName>
          <date type="start">1939-10-19</date>
          <desc>
            <address>
              <country key="FR"/>
            </address>
            <ref type="url">https://www.cnrs.fr/</ref>
          </desc>
        </org>
        <org type="institution" xml:id="struct-92114" status="OLD">
          <idno type="ROR">https://ror.org/01x3gbx83</idno>
          <orgName>Institut National de la Recherche Agronomique</orgName>
          <orgName type="acronym">INRA</orgName>
          <date type="start">1946-05-18</date>
          <date type="end">2019-12-31</date>
          <desc>
            <address>
              <country key="FR"/>
            </address>
            <ref type="url">http://www.inra.fr</ref>
          </desc>
        </org>
        <org type="department" xml:id="struct-21582" status="VALID">
          <idno type="IdRef">200714651</idno>
          <idno type="ISNI">0000 0004 0370 4353</idno>
          <idno type="RNSR">200012703M</idno>
          <idno type="ROR">https://ror.org/00xc55v17</idno>
          <idno type="Wikidata">Q51785052</idno>
          <orgName>Génomique métabolique</orgName>
          <orgName type="acronym">UMR 8030</orgName>
          <date type="start">2020-01-01</date>
          <desc>
            <address>
              <addrLine>GENOSCOPE, 2 rue Gaston Crémieux 91057 Evry Cedex</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">http://www.genoscope.cns.fr/spip/UMR-8030-de-Genomique-metabolique.html</ref>
          </desc>
          <listRelation>
            <relation name="DRF/JACOB" active="#struct-55375" type="direct"/>
            <relation active="#struct-419361" type="indirect"/>
            <relation name="DRF/JACOB" active="#struct-465913" type="indirect"/>
            <relation active="#struct-300016" type="indirect"/>
            <relation active="#struct-300306" type="direct"/>
            <relation name="UMR8030" active="#struct-441569" type="direct"/>
          </listRelation>
        </org>
        <org type="laboratory" xml:id="struct-55375" status="VALID">
          <orgName>Genoscope - Centre national de séquençage [Evry]</orgName>
          <orgName type="acronym">GENOSCOPE</orgName>
          <desc>
            <address>
              <addrLine>2, rue Gaston Crémieux CP5706 91057 EVRY Cedex</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">http://www.genoscope.cns.fr</ref>
          </desc>
          <listRelation>
            <relation active="#struct-419361" type="direct"/>
            <relation name="DRF/JACOB" active="#struct-465913" type="direct"/>
            <relation active="#struct-300016" type="indirect"/>
          </listRelation>
        </org>
        <org type="institution" xml:id="struct-419361" status="VALID">
          <idno type="IdRef">241345251</idno>
          <idno type="ROR">https://ror.org/03xjwb503</idno>
          <orgName>Université Paris-Saclay</orgName>
          <desc>
            <address>
              <addrLine>Bâtiment Bréguet, 3 Rue Joliot Curie 2e ét, 91190 Gif-sur-Yvette</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">https://www.universite-paris-saclay.fr/fr</ref>
          </desc>
        </org>
        <org type="regrouplaboratory" xml:id="struct-465913" status="VALID">
          <idno type="IdRef">251118436</idno>
          <idno type="RNSR">201622496M</idno>
          <idno type="ROR">https://ror.org/01yvj5k91</idno>
          <idno type="Wikidata">Q52604525</idno>
          <orgName>Direction de Recherche Fondamentale (CEA)</orgName>
          <orgName type="acronym">DRF (CEA)</orgName>
          <date type="start">2016-01-01</date>
          <desc>
            <address>
              <addrLine>Direction de Recherche FondamentaleFundamental Research DivisionCEA Saclay91191 Gif-sur-Yvette</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">http://ceasciences.fr/</ref>
          </desc>
          <listRelation>
            <relation active="#struct-300016" type="direct"/>
          </listRelation>
        </org>
        <org type="institution" xml:id="struct-300016" status="VALID">
          <idno type="IdRef">026372061</idno>
          <idno type="ISNI">0000000122998025</idno>
          <idno type="ROR">https://ror.org/00jjx8s55</idno>
          <idno type="Wikidata">Q868550</idno>
          <orgName>Commissariat à l'énergie atomique et aux énergies alternatives</orgName>
          <orgName type="acronym">CEA</orgName>
          <desc>
            <address>
              <addrLine>Centre de SaclayCentre de GrenobleCentre de Cadaracheetc</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">http://www.cea.fr/</ref>
          </desc>
        </org>
        <org type="institution" xml:id="struct-300306" status="VALID">
          <idno type="IdRef">030820529</idno>
          <idno type="ISNI">0000000121805818</idno>
          <idno type="ROR">https://ror.org/00e96v939</idno>
          <idno type="Wikidata">Q1531014</idno>
          <orgName>Université d'Évry-Val-d'Essonne</orgName>
          <orgName type="acronym">UEVE</orgName>
          <date type="start">1991-07-22</date>
          <desc>
            <address>
              <addrLine>Boulevard François Mitterrand 91025 Evry Cedex</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">http://www.univ-evry.fr</ref>
          </desc>
        </org>
        <org type="regroupinstitution" xml:id="struct-361557" status="VALID">
          <idno type="IdRef">026425157</idno>
          <idno type="ROR">https://ror.org/01q1z8k08</idno>
          <orgName>State University of New York</orgName>
          <orgName type="acronym">SUNY</orgName>
          <desc>
            <address>
              <country key="US"/>
            </address>
            <ref type="url">http://www.suny.edu/</ref>
          </desc>
        </org>
        <org type="institution" xml:id="struct-11574" status="VALID">
          <idno type="ISNI">0000000121539871</idno>
          <idno type="ROR">https://ror.org/05kpkpg04</idno>
          <orgName>Centre de Coopération Internationale en Recherche Agronomique pour le Développement</orgName>
          <orgName type="acronym">Cirad</orgName>
          <date type="start">1984-06-01</date>
          <desc>
            <address>
              <addrLine>Siège 42, rue Scheffer 75116 Paris</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">http://www.cirad.fr</ref>
          </desc>
        </org>
        <org type="institution" xml:id="struct-410122" status="OLD">
          <idno type="ISNI">0000000120970141</idno>
          <idno type="ROR">https://ror.org/051escj72</idno>
          <orgName>Université de Montpellier</orgName>
          <orgName type="acronym">UM</orgName>
          <date type="end">2021-12-31</date>
          <desc>
            <address>
              <addrLine>163 rue Auguste Broussonnet - 34090 Montpellier</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">http://www.umontpellier.fr/</ref>
          </desc>
        </org>
        <org type="regrouplaboratory" xml:id="struct-451860" status="VALID">
          <orgName>Institut de Recherche pour le Développement - délégation Occitanie</orgName>
          <orgName type="acronym">IRD [Occitanie]</orgName>
          <desc>
            <address>
              <addrLine>911 avenue Agropolis,BP 6450134394 Montpellier cedex 5</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">https://occitanie.ird.fr/</ref>
          </desc>
          <listRelation>
            <relation active="#struct-67872" type="direct"/>
          </listRelation>
        </org>
        <org type="institution" xml:id="struct-67872" status="VALID">
          <idno type="IdRef">050165224</idno>
          <idno type="ROR">https://ror.org/05q3vnk25</idno>
          <orgName>Institut de Recherche pour le Développement</orgName>
          <orgName type="acronym">IRD</orgName>
          <desc>
            <address>
              <addrLine>SiègeLe Sextant 44, bd de DunkerqueCS 9000913572 Marseille cedex 02</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">http://www.ird.fr/</ref>
          </desc>
        </org>
      </listOrg>
      <listOrg type="projects">
        <org type="anrProject" xml:id="projanr-34965" status="VALID">
          <idno type="anr">ANR-12-ADAP-0014</idno>
          <idno type="program">Adaptation : des gènes aux populations. Génétique et biologie de l'adaptation aux stress et aux perturbations</idno>
          <orgName>SHAPE</orgName>
          <desc>Design de nouveaux rhizobia par évolution expérimentale: vers une compréhension de l'adaptation des bactéries à l'environnement plante</desc>
          <date type="start">2012</date>
        </org>
        <org type="anrProject" xml:id="projanr-44401" status="VALID">
          <idno type="anr">ANR-16-CE20-0011</idno>
          <orgName>REPLAY</orgName>
          <desc>Rejouer l'évolution des rhizobia: vers un cadre conceptuel et pratique pour le design de nouveaux symbiotes fixateurs</desc>
          <date type="start">2016</date>
        </org>
        <org type="anrProject" xml:id="projanr-37939" status="VALID">
          <idno type="anr">ANR-11-IDEX-0002</idno>
          <idno type="program">Initiative d'excellence</idno>
          <orgName>UNITI</orgName>
          <desc>Université Fédérale de Toulouse</desc>
          <date type="start">2011</date>
        </org>
        <org type="anrProject" xml:id="projanr-49191" status="VALID">
          <idno type="anr">ANR-10-INBS-0009</idno>
          <orgName>France Génomique</orgName>
          <desc>Organisation et montée en puissance d'une Infrastructure Nationale de Génomique</desc>
          <date type="start">2010</date>
        </org>
      </listOrg>
    </back>
  </text>
</TEI>