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TADs are 3D structural units of higher-order chromosome organization in Drosophila

Quentin Szabo , Daniel Jost , Jia-Ming Chang , Diego Cattoni , Giorgio Papadopoulos et al.
Science Advances , 2018, 4 (2), pp.eaar8082. ⟨10.1126/sciadv.aar8082⟩
Journal articles hal-01726709v1
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Guidelines for cell-type heterogeneity quantification based on a comparative analysis of reference-free DNA methylation deconvolution software

Clémentine Decamps , Florian Privé , Raphael Bacher , Daniel Jost , Arthur Waguet et al.
BMC Bioinformatics, 2020, 21 (1), ⟨10.1186/s12859-019-3307-2⟩
Journal articles hal-03012777v1

Correcting principal component maps for effects of spatial autocorrelation in population genetic data.

Eric Frichot , Sean Schoville , Guillaume Bouchard , Olivier François
Front Genet, 2012, 3, pp.254. ⟨10.3389/fgene.2012.00254⟩
Journal articles hal-00773660v1

Managing Missing Data in the Hospital Survey on Patient Safety Culture: A Simulation Study

Bastien Boussat , Olivier François , Julien Viotti , Arnaud Seigneurin , Joris Giai et al.
Journal of Patient Safety, 2021, 17 (2), pp.e98-e106. ⟨10.1097/PTS.0000000000000595⟩
Journal articles hal-03836869v2

Big-data et surveillance en santé-travail : application aux travailleurs agricoles

Charlotte Maugard , Delphine Bosson-Rieutort , Damien Ozenfant , Olivier François , Vincent Bonneterre et al.
Archives des Maladies Professionnelles et de L'Environnement, 2018, 79 (3), pp.406. ⟨10.1016/j.admp.2018.03.441⟩
Journal articles hal-02062804v1
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Probabilistic Count Matrix Factorization for Single Cell Expression Data Analysis

Ghislain Durif , Laurent Modolo , Jeff E Mold , Sophie Lambert-Lacroix , Franck Picard et al.
Bioinformatics, 2019, 35, 20, pp.4011-4019. ⟨10.1093/bioinformatics/btz177⟩
Journal articles hal-01649275v3
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Assigning function to natural allelic variation via dynamic modeling of gene network induction

Magali Richard , Florent Chuffart , Hélène Duplus‐bottin , Fanny Pouyet , Martin Spichty et al.
Molecular Systems Biology, 2018, 14 (1), pp.e7803. ⟨10.15252/msb.20177803⟩
Journal articles hal-01976613v1

Team Emergency Assessment Measure (TEAM) for the assessment of non-technical skills during resuscitation: Validation of the French version

Maxime Maignan , François-Xavier Koch , Jordane Chaix , Pierre Phellouzat , Gery Binauld et al.
Resuscitation, 2016, 101, pp.115-120. ⟨10.1016/j.resuscitation.2015.11.024⟩
Journal articles hal-02070784v1
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PATL2 is a key actor of oocyte maturation whose invalidation causes infertility in women and mice

Marie Christou‐kent , Zine‐eddine Kherraf , Amir Amiri‐yekta , Emilie Le Blévec , Thomas Karaouzène et al.
EMBO Molecular Medicine, 2018, 10 (5), pp.e8515. ⟨10.15252/emmm.201708515⟩
Journal articles hal-01877992v1
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Characteristics of morbidity and mortality conferences associated with the implementation of patient safety improvement initiatives, an observational study

Patrice François , Frédéric Prate , Gwenaëlle Vidal-Trecan , Jean-François Quaranta , Jose Labarere et al.
BMC Health Services Research, 2016, 16, pp.35. ⟨10.1186/s12913-016-1279-8⟩
Journal articles inserm-02072789v1
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Guidelines for cell-type heterogeneity quantification based on a comparative analysis of reference-free DNA methylation deconvolution software

Clémentine Decamps , Florian Privé , Raphael Bacher , Daniel Jost , Arthur Waguet et al.
BMC Bioinformatics, 2020, 21 (1), ⟨10.1186/s12859-019-3307-2⟩
Journal articles hal-02997889v1
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CRELD1 is an evolutionarily-conserved maturational enhancer of ionotropic acetylcholine receptors

Manuela d'Alessandro , Magali Richard , Christian Stigloher , Vincent Gache , Thomas Boulin et al.
Journal articles hal-02009626v1
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PenDA, a rank-based method for personalized differential analysis: Application to lung cancer

Magali Richard , Clémentine Decamps , Florent Chuffart , Elisabeth Brambilla , Sophie Rousseaux et al.
PLoS Computational Biology, 2020, 16 (5), pp.e1007869. ⟨10.1371/journal.pcbi.1007869⟩
Journal articles inserm-02868566v1

PLS et modèle de Cox avec application aux données d'expression de gènes

Sophie Lambert-Lacroix , Frédérique Letué
43èmes journées de Statistique, May 2011, Tunis, Tunisie
Conference papers hal-00852085v1

[Mortality and morbidity conference: A tool for quality and safety of care continuous improvement].

P. François , E. Sellier , P. Pouzol , G. Bal , J. Labarère et al.
Transfusion Clinique et Biologique, 2011, 18 (1), pp.43-8. ⟨10.1016/j.tracli.2010.10.003⟩
Journal articles hal-00843440v1

Predictions of native American population structure using linguistic covariates in a hidden regression framework.

Flora Jay , Olivier François , Michael G B Blum
PLoS ONE, 2011, 6 (1), pp.e16227. ⟨10.1371/journal.pone.0016227⟩
Journal articles hal-00655073v1

Validation of a clinical prediction model for early admission to the intensive care unit of patients with pneumonia.

José Labarère , Philipp Schuetz , Bertrand Renaud , Yann-Erick Claessens , Werner Albrich et al.
Academic Emergency Medicine, 2012, 19 (9), pp.993-1003. ⟨10.1111/j.1553-2712.2012.01424.x⟩
Journal articles hal-00843355v1
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Deep learning: step forward to high‐resolution in vivo shortwave infrared imaging

Vladimir A Baulin , Yves Usson , Xavier Le Guével
Journal of Biophotonics, 2021, 14 (7), pp.e202100102. ⟨10.1002/jbio.202100102⟩
Journal articles hal-03365751v1

Predicting the success of an invader: Niche shift versus niche conservatism

Stéphanie Sherpa , Maya Gueguen , Julien Renaud , Michael Blum , Thierry Gaude et al.
Ecology and Evolution, 2019, 9 (22), pp.12658-12675. ⟨10.1002/ece3.5734⟩
Journal articles hal-02414980v1

LEA 3: Factor models in population genetics and ecological genomics with R

Clément Gain , Olivier François
Molecular Ecology Resources, 2021, ⟨10.1111/1755-0998.13366⟩
Journal articles hal-03289671v1
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A Methodology for Evaluating the Extensibility of Boolean Networks’ Structure and Function

Rémi Segretain , Sergiu Ivanov , Laurent Trilling , Nicolas Glade
9th International Conference on Complex Networks and their Applications (COMPLEX NETWORKS 2020), Dec 2020, Madrid, Spain. pp.372-385, ⟨10.1007/978-3-030-65351-4_30⟩
Conference papers hal-03168800v1

Genome Wide Association Study Pinpoints Key Agronomic QTLs in African Rice Oryza glaberrima

Philippe Cubry , Hélène Pidon , Kim Nhung Ta , Christine Tranchant-Dubreuil , Anne-Céline Thuillet et al.
Journal articles hal-03289676v1

Theory-Based Interventions Combining Mental Simulation and Planning Techniques to Improve Physical Activity: Null Results from Two Randomized Controlled Trials

Carine Meslot , Aurélie Gauchet , Benoit Allenet , Olivier François , Martin S Hagger et al.
Frontiers in Psychology, 2016, 7, ⟨10.3389/fpsyg.2016.01789⟩
Journal articles hal-02007466v1

Incidence of prostate cancer and net survival by grade in a geriatric population: A population-based study in a French administrative entity from 1991 to 2013

Alexandre Bellier , Marc Colonna , Patricia Delafosse , Arnaud Seigneurin
Cancer Epidemiology, 2018, 56, pp.60-66. ⟨10.1016/j.canep.2018.07.007⟩
Journal articles hal-02272398v1

Guns, germs and dogs: On the origin of Leishmania chagasi

Raphaël Leblois , Katrin Kuhls , Olivier François , Gabriele Schönian , Thierry Wirth et al.
Infection, Genetics and Evolution, 2011, 11 (5), pp.1091-1095. ⟨10.1016/j.meegid.2011.04.004⟩
Journal articles hal-02931001v1
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Conditional fractional Gaussian fields with the package FieldSim

Alexandre Brouste , Jacques Istas , Sophie Lambert-Lacroix
The R Journal, 2016, 8 (1), pp.38-47
Journal articles hal-02271831v1
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Five-Year Trends in Multifocal Electroretinogram for Patients With Birdshot Chorioretinopathy

Adriane Mailhac , Jose Labarere , Florent Aptel , Sylvie Berthemy , Laurence Bouillet et al.
American Journal of Ophthalmology, 2019, 200, pp.138-149. ⟨10.1016/j.ajo.2018.11.022⟩
Journal articles hal-02272296v1

Phénomènes critiques en épidémiologie : résistance, spatialité, dynamiques humaines.

Nicolas Glade , Olivier Bastien , Hessam Hessami
Le vivant critique et chaotique, 1ère Edition, Editions Matériologiques, 424 p., 2015, Modélisations, Simulations, Systèmes Complexes, 978-2-919694-93-8
Book sections hal-02795656v1

Coupling 1D modifications and 3D nuclear organization: data, models and function

Daniel Jost , Cédric Vaillant , Peter Meister
Current Opinion in Cell Biology, 2017, 44, pp.20-27
Journal articles hal-01976581v1
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Modelling the role of HIF in the regulation of metabolic key genes LDH and PDH: Emergence of Warburg Phenotype

Kévin Spinicci , Pierre Jacquet , Gibin Powathil , Angélique Stéphanou
Computational and Systems Oncology, In press
Journal articles hal-03759747v1