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Document type : Journal articles
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RiboTaxa: combined approaches for rRNA genes taxonomic resolution down to the species level from metagenomics data revealing novelties

Oshma Chakoory , Sophie Comtet-Marre , Pierre Peyret
NAR Genomics and Bioinformatics, 2022, 4 (3), ⟨10.1093/nargab/lqac070⟩
Journal articles hal-03794089v1
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Comparative genomics highlights the unique biology of Methanomassiliicoccales, a Thermoplasmatales-related seventh order of methanogenic archaea that encodes pyrrolysine.

Guillaume Borrel , Nicolas Parisot , Hugh Harris , Eric Peyretaillade , Nadia Gaci et al.
BMC Genomics, 2014, 15 (1), pp.679. ⟨10.1186/1471-2164-15-679⟩
Journal articles pasteur-01059404v1
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Mixed mucosal-parenteral immunizations with the broadly conserved pathogenic Escherichia coli antigen SslE induce a robust mucosal and systemic immunity without affecting the murine intestinal microbiota

Ilham Naili , Juliette Vinot , Barbara C. Baudner , Annick Bernalier-Donadille , Mariagrazia Pizza et al.
Vaccine, 2019, 37 (2), pp.314-324. ⟨10.1016/j.vaccine.2018.10.008⟩
Journal articles hal-02320239v1
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InlL from listeria monocytogenes Is involved in biofilm formation and adhesion to mucin

Magdalena Popowska , Agata Krawczyk-Balska , Rafał Ostrowski , Mickael M. Desvaux
Frontiers in Microbiology, 2017, 8, pp.660. ⟨10.3389/fmicb.2017.00660⟩
Journal articles hal-01602737v1
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Tryptophan: A gut microbiota-derived metabolites regulating inflammation

Lucie Etienne-Mesmin , Benoit Chassaing , Andrew T Gewirtz
World Journal of Gastrointestinal Pharmacology and Therapeutics, 2017, 8 (1), pp.7. ⟨10.4292/wjgpt.v8.i1.7⟩
Journal articles hal-01658590v1
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Early-life microbiota exposure restricts myeloid-derived suppressor cell-driven colonic tumorigenesis Running Title: Early-life microbiota restricts colonic tumorigenesis

Akihito Harusato , Emilie Viennois , Lucie Etienne-Mesmin , Shingo Matsuyama , Hirohito Abo et al.
Cancer Immunology Research, 2019, 7 (4), pp.544-551. ⟨10.1158/2326-6066.CIR-18-0444⟩
Journal articles hal-02335668v1
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Addressing global ruminant agricultural challenges through understanding the rumen microbiome: Past, present, and future

Sharon A. Huws , Christopher J. Creevey , Linda B. Oyama , Itzhak Mizrahi , Stuart E. Denman et al.
Frontiers in Microbiology, 2018, 9, ⟨10.3389/fmicb.2018.02161⟩
Journal articles hal-01890696v1
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Listeria monocytogenes Biofilm Adaptation to Different Temperatures Seen Through Shotgun Proteomics

Tiago Santos , Didier Viala , Christophe Chambon , Julia Esbelin , Michel Hébraud et al.
Frontiers in nutrition, 2019, 6, pp.89. ⟨10.3389/fnut.2019.00089⟩
Journal articles hal-02320163v1
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Reliability of a participant-friendly fecal collection method for microbiome analyses: a step towards large sample size investigation

Joanna W. Szopinska , Raphaële Gresse , Saskia van Der Marel , Jos Boekhorst , Sabina Lukovac et al.
BMC Microbiology, 2018, 18 (1), ⟨10.1186/s12866-018-1249-x⟩
Journal articles hal-02621113v1
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Le microbiote comme outil thérapeutique dans l’allergie alimentaire

Bertrand Evrard , B. Bonnet , Grégory Jubelin , Annick Bernalier-Donadille
Revue francaise d'allergologie, 2019, 59 (3), pp.152-153. ⟨10.1016/j.reval.2019.02.223⟩
Journal articles hal-02154533v1
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Ruminant microbiota : research status and impacts of microbiota on animal performance and health

Asma Zened , Evelyne Forano , Céline Delbes , Isabelle Verdier-Metz , Diego Morgavi et al.
INRAE Productions Animales, 2020, 33 (4), pp.249-260. ⟨10.20870/productions-animales.2020.33.4.4597⟩
Journal articles hal-03227796v1
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Encephalitozoon cuniculi (Microspora) genome: physical map and evidence for telomere-associated rDNA units on all chromosomes

Jean-François Brugère , Emmanuel Cornillot , Guy Méténier , Aaron Bensimon , Christian Vivarès et al.
Nucleic Acids Research, 2000, 28 (10), pp.2026 - 2033. ⟨10.1093/nar/28.10.2026⟩
Journal articles hal-01612753v1
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Role of the Nitric Oxide Reductase NorVW in the Survival and Virulence of Enterohaemorrhagic Escherichia coli during Infection

Marion Gardette , Julien Daniel , Estelle Loukiadis , Grégory Jubelin
Pathogens, 2020, 9 (9), pp.683. ⟨10.3390/pathogens9090683⟩
Journal articles hal-02926321v1
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Synergies between division of labor and gut microbiomes of social insects

V.M. Sinotte , J. Renelies-Hamilton , B.A. Taylor , K.M. Ellegaard , Panagiotis Sapountzis et al.
Frontiers in Ecology and Evolution, 2020, 7, ⟨10.3389/fevo.2019.00503⟩
Journal articles hal-02624876v1
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Characterisation of microbiota in saliva, bronchoalveolar lavage fluid, non-malignant, peritumoural and tumour tissue in non-small cell lung cancer patients: a cross-sectional clinical trial

Rea Bingula , Edith Filaire , Ioana Molnar , Eve Delmas , Jean-Yves Berthon et al.
Respiratory Research, 2020, 21 (1), ⟨10.1186/s12931-020-01392-2⟩
Journal articles hal-02648034v1
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Spatial and temporal modulation of enterotoxigenic E. coli H10407 pathogenesis and interplay with microbiota in human gut models

Charlène Roussel , Kim de Paepe , Wessam Galia , Jana de Bodt , Sandrine Chalancon et al.
BMC Biology, 2020, 18 (1), ⟨10.1186/s12915-020-00860-x⟩
Journal articles hal-02975861v1
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Production of maltodextrin 1-Phosphate by Fibrobacter succinogenes S85

Régis Nouaille , Maria Matulova , A.M. Delort , Evelyne Forano
FEBS Letters, 2004, 576, pp.226-230. ⟨10.1016/j.bebslet.2004.09.019⟩
Journal articles hal-00136126v1
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Microbial Diversity Under the Influence of Natural Gas Storage in a Deep Aquifer

Magali Ranchou-Peyruse , Marion Guignard , Franck Casteran , Maïder Abadie , Clémence Defois et al.
Frontiers in Microbiology, 2021, 12, pp.688929. ⟨10.3389/fmicb.2021.688929⟩
Journal articles hal-03418795v1
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Improvement of Taste Enhancer Condiment Processing and Safety Using Marinade and bio-preservation of Cassava Fish ( Pseudotolithus Sp)

Janvier Melegnonfan Kindossi , Ogouyôm Herbert Iko Afé , Générose Vieira-Dalodé , Noël Houédougbé Akissoé , Sabine Leroy et al.
Journal of Culinary Science and Technology, 2022, pp.1-17. ⟨10.1080/15428052.2022.2104770⟩
Journal articles hal-03753332v1
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Western diet induces a shift in microbiota composition enhancing susceptibility to Adherent-Invasive E. coli infection and intestinal inflammation.

Allison Agus , Jérémy Denizot , Jonathan Thevenot , Margarita Martinez-Medina , Sébastien Massier et al.
Scientific Reports, 2016, 6 (1), pp.19032. ⟨10.1038/srep19032⟩
Journal articles hal-01928173v1
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Staphylococcal ecosystem of kitoza, a traditional malagasy meat product

Angela Ratsimba , Sabine Leroy , Jean-Paul Chacornac , Danielle Rakoto , Elodie Arnaud et al.
International Journal of Food Microbiology, 2017, 246, pp.20-24. ⟨10.1016/j.ijfoodmicro.2017.02.001⟩
Journal articles hal-01602697v1
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Role of mucus-bacteria interactions in Enterotoxigenic Escherichia coli (ETEC) H10407 virulence and interplay with human microbiome

Thomas Sauvaitre , Josefien van Landuyt , Claude Durif , Charlène Roussel , Adeline Sivignon et al.
npj Biofilms and Microbiomes, 2022, 8 (1), pp.86. ⟨10.1038/s41522-022-00344-6⟩
Journal articles hal-03832893v1
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IL-22-induced cell extrusion and IL-18-induced cell death prevent and cure rotavirus infection

Zhan Zhang , Jun Zou , Zhenda Shi , Benyue Zhang , Lucie Etienne-Mesmin et al.
Science Immunology, 2020, 5 (52), pp.eabd2876. ⟨10.1126/sciimmunol.abd2876⟩
Journal articles hal-02965130v1
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Special Issue: Beneficial microorganisms for food manufacturing-fermented and biopreserved foods and beverages

Régine Talon , Monique M. Zagorec
Microorganisms, 2017, 5 (4), pp.1-2. ⟨10.3390/microorganisms5040071⟩
Journal articles hal-02617571v1
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Desired turbulence? Gut-lung axis, immunity, and lung cancer

Rea Bingula , Marc Filaire , Nina Radosevic-Robin , Mathieu Bey , Jean-Yves Berthon et al.
Journal of Oncology, 2017, 2017, pp.1-15. ⟨10.1155/2017/5035371⟩
Journal articles hal-01652921v1
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Critical review on biofilm methods

Joana Azeredo , Nuno F. Azevedo , Romain Briandet , Nuno Cerca , Tom Coenye et al.
Critical Reviews in Microbiology, 2017, 43 (3), pp.313-351. ⟨10.1080/1040841X.2016.1208146⟩
Journal articles hal-01548680v1
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Comparative genomics of microsporidian genomes reveals a minimal non-coding RNA set and new insights for transcription in minimal eukaryotic genomes

Abdel Belkorchia , Jean-François Pombert , Valérie Polonais , Nicolas Parisot , Frédéric Delbac et al.
DNA Research, 2017, 24 (3), pp.251-260. ⟨10.1093/dnares/dsx002⟩
Journal articles hal-01594835v1
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Variation of Antigen 43 self-association modulates bacterial compacting within aggregates and biofilms

Julieanne L Vo , Gabriela C Martínez Ortiz , Makrina Totsika , Alvin W Lo , Steven J Hancock et al.
npj Biofilms and Microbiomes, 2022, 8 (1), pp.20. ⟨10.1038/s41522-022-00284-1⟩
Journal articles hal-03697184v1
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The Arabidopsis thaliana–Streptomyces Interaction Is Controlled by the Metabolic Status of the Holobiont

Stéfanie Graindorge , Claire Villette , Sandrine Koechler , Chloé Groh , Sophie Comtet-Marre et al.
International Journal of Molecular Sciences, 2022, 23 (21), pp.12952. ⟨10.3390/ijms232112952⟩
Journal articles hal-03858976v1
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ArthropodaCyc: a CycADS powered collection of BioCyc databases to analyse and compare metabolism of arthropods

Patrice Baa-Puyoulet , Nicolas Parisot , Gérard Febvay , Jaime Huerta-Cepas , Augusto F Vellozo et al.
Database - The journal of Biological Databases and Curation, 2016, pp.1-9. ⟨10.1093/database/baw081⟩
Journal articles hal-01352558v1