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RiboTaxa: combined approaches for rRNA genes taxonomic resolution down to the species level from metagenomics data revealing novelties
Oshma Chakoory
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Sophie Comtet-Marre
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Pierre Peyret
Journal articles
hal-03794089v1
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Comparative genomics highlights the unique biology of Methanomassiliicoccales, a Thermoplasmatales-related seventh order of methanogenic archaea that encodes pyrrolysine.
Guillaume Borrel
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Nicolas Parisot
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Hugh Harris
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Eric Peyretaillade
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Nadia Gaci
et al.
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pasteur-01059404v1
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Mixed mucosal-parenteral immunizations with the broadly conserved pathogenic Escherichia coli antigen SslE induce a robust mucosal and systemic immunity without affecting the murine intestinal microbiota
Ilham Naili
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Juliette Vinot
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Barbara C. Baudner
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Annick Bernalier-Donadille
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Mariagrazia Pizza
et al.
Journal articles
hal-02320239v1
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InlL from listeria monocytogenes Is involved in biofilm formation and adhesion to mucin
Magdalena Popowska
,
Agata Krawczyk-Balska
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Rafał Ostrowski
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Mickael M. Desvaux
Journal articles
hal-01602737v1
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Tryptophan: A gut microbiota-derived metabolites regulating inflammation
Lucie Etienne-Mesmin
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Benoit Chassaing
,
Andrew T Gewirtz
Journal articles
hal-01658590v1
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Early-life microbiota exposure restricts myeloid-derived suppressor cell-driven colonic tumorigenesis Running Title: Early-life microbiota restricts colonic tumorigenesis
Akihito Harusato
,
Emilie Viennois
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Lucie Etienne-Mesmin
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Shingo Matsuyama
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Hirohito Abo
et al.
Journal articles
hal-02335668v1
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Addressing global ruminant agricultural challenges through understanding the rumen microbiome: Past, present, and future
Sharon A. Huws
,
Christopher J. Creevey
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Linda B. Oyama
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Itzhak Mizrahi
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Stuart E. Denman
et al.
Journal articles
hal-01890696v1
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Listeria monocytogenes Biofilm Adaptation to Different Temperatures Seen Through Shotgun Proteomics
Tiago Santos
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Didier Viala
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Christophe Chambon
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Julia Esbelin
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Michel Hébraud
et al.
Journal articles
hal-02320163v1
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Reliability of a participant-friendly fecal collection method for microbiome analyses: a step towards large sample size investigation
Joanna W. Szopinska
,
Raphaële Gresse
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Saskia van Der Marel
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Jos Boekhorst
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Sabina Lukovac
et al.
Journal articles
hal-02621113v1
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Le microbiote comme outil thérapeutique dans l’allergie alimentaire
Bertrand Evrard
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B. Bonnet
,
Grégory Jubelin
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Annick Bernalier-Donadille
Journal articles
hal-02154533v1
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Ruminant microbiota : research status and impacts of microbiota on animal performance and health
Asma Zened
,
Evelyne Forano
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Céline Delbes
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Isabelle Verdier-Metz
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Diego Morgavi
et al.
Journal articles
hal-03227796v1
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Encephalitozoon cuniculi (Microspora) genome: physical map and evidence for telomere-associated rDNA units on all chromosomes
Jean-François Brugère
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Emmanuel Cornillot
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Guy Méténier
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Aaron Bensimon
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Christian Vivarès
et al.
Journal articles
hal-01612753v1
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Role of the Nitric Oxide Reductase NorVW in the Survival and Virulence of Enterohaemorrhagic Escherichia coli during Infection
Marion Gardette
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Julien Daniel
,
Estelle Loukiadis
,
Grégory Jubelin
Journal articles
hal-02926321v1
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Synergies between division of labor and gut microbiomes of social insects
V.M. Sinotte
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J. Renelies-Hamilton
,
B.A. Taylor
,
K.M. Ellegaard
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Panagiotis Sapountzis
et al.
Journal articles
hal-02624876v1
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Characterisation of microbiota in saliva, bronchoalveolar lavage fluid, non-malignant, peritumoural and tumour tissue in non-small cell lung cancer patients: a cross-sectional clinical trial
Rea Bingula
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Edith Filaire
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Ioana Molnar
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Eve Delmas
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Jean-Yves Berthon
et al.
Journal articles
hal-02648034v1
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Spatial and temporal modulation of enterotoxigenic E. coli H10407 pathogenesis and interplay with microbiota in human gut models
Charlène Roussel
,
Kim de Paepe
,
Wessam Galia
,
Jana de Bodt
,
Sandrine Chalancon
et al.
Journal articles
hal-02975861v1
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Production of maltodextrin 1-Phosphate by Fibrobacter succinogenes S85
Régis Nouaille
,
Maria Matulova
,
A.M. Delort
,
Evelyne Forano
Journal articles
hal-00136126v1
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Microbial Diversity Under the Influence of Natural Gas Storage in a Deep Aquifer
Magali Ranchou-Peyruse
,
Marion Guignard
,
Franck Casteran
,
Maïder Abadie
,
Clémence Defois
et al.
Journal articles
hal-03418795v1
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Improvement of Taste Enhancer Condiment Processing and Safety Using Marinade and bio-preservation of Cassava Fish ( Pseudotolithus Sp)
Janvier Melegnonfan Kindossi
,
Ogouyôm Herbert Iko Afé
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Générose Vieira-Dalodé
,
Noël Houédougbé Akissoé
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Sabine Leroy
et al.
Journal articles
hal-03753332v1
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Western diet induces a shift in microbiota composition enhancing susceptibility to Adherent-Invasive E. coli infection and intestinal inflammation.
Allison Agus
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Jérémy Denizot
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Jonathan Thevenot
,
Margarita Martinez-Medina
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Sébastien Massier
et al.
Journal articles
hal-01928173v1
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Staphylococcal ecosystem of kitoza, a traditional malagasy meat product
Angela Ratsimba
,
Sabine Leroy
,
Jean-Paul Chacornac
,
Danielle Rakoto
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Elodie Arnaud
et al.
Journal articles
hal-01602697v1
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Role of mucus-bacteria interactions in Enterotoxigenic Escherichia coli (ETEC) H10407 virulence and interplay with human microbiome
Thomas Sauvaitre
,
Josefien van Landuyt
,
Claude Durif
,
Charlène Roussel
,
Adeline Sivignon
et al.
Journal articles
hal-03832893v1
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IL-22-induced cell extrusion and IL-18-induced cell death prevent and cure rotavirus infection
Zhan Zhang
,
Jun Zou
,
Zhenda Shi
,
Benyue Zhang
,
Lucie Etienne-Mesmin
et al.
Journal articles
hal-02965130v1
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Special Issue: Beneficial microorganisms for food manufacturing-fermented and biopreserved foods and beverages
Régine Talon
,
Monique M. Zagorec
Journal articles
hal-02617571v1
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Desired turbulence? Gut-lung axis, immunity, and lung cancer
Rea Bingula
,
Marc Filaire
,
Nina Radosevic-Robin
,
Mathieu Bey
,
Jean-Yves Berthon
et al.
Journal articles
hal-01652921v1
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Critical review on biofilm methods
Joana Azeredo
,
Nuno F. Azevedo
,
Romain Briandet
,
Nuno Cerca
,
Tom Coenye
et al.
Journal articles
hal-01548680v1
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Comparative genomics of microsporidian genomes reveals a minimal non-coding RNA set and new insights for transcription in minimal eukaryotic genomes
Abdel Belkorchia
,
Jean-François Pombert
,
Valérie Polonais
,
Nicolas Parisot
,
Frédéric Delbac
et al.
Journal articles
hal-01594835v1
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Variation of Antigen 43 self-association modulates bacterial compacting within aggregates and biofilms
Julieanne L Vo
,
Gabriela C Martínez Ortiz
,
Makrina Totsika
,
Alvin W Lo
,
Steven J Hancock
et al.
Journal articles
hal-03697184v1
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The Arabidopsis thaliana–Streptomyces Interaction Is Controlled by the Metabolic Status of the Holobiont
Stéfanie Graindorge
,
Claire Villette
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Sandrine Koechler
,
Chloé Groh
,
Sophie Comtet-Marre
et al.
Journal articles
hal-03858976v1
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ArthropodaCyc: a CycADS powered collection of BioCyc databases to analyse and compare metabolism of arthropods
Patrice Baa-Puyoulet
,
Nicolas Parisot
,
Gérard Febvay
,
Jaime Huerta-Cepas
,
Augusto F Vellozo
et al.
Journal articles
hal-01352558v1
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