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Document type : Journal articles
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Revealing microbial species diversity using sequence capture by hybridization

Sophie Marre , Cyrielle Gasc , Camille Forest , Yacine Lebbaoui , Pascale Mosoni et al.
Microbial Genomics, 2021, 7 (12), ⟨10.1099/mgen.0.000714⟩
Journal articles hal-03474056v1
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Interactions between carbon and nitrogen metabolism in fibrobacter succinogenes S85 : A 1H and 13C nuclear magnetic resonance and enzymatic study

C. Matheron , A.M. Delort , Gérard Gaudet , T. Liptaj , Evelyne Forano et al.
Applied and Environmental Microbiology, 1999, 65 (5), pp.1941-1948
Journal articles hal-02694730v1
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Contribution of omics to biopreservation: Toward food microbiome engineering

Frédéric Borges , Romain Briandet , Cécile Callon , Marie-Christine Champomier-Vergès , Souad Christieans et al.
Frontiers in Microbiology, 2022, 13, pp.1-16. ⟨10.3389/fmicb.2022.951182⟩
Journal articles hal-03751737v1
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Pathogen Challenge and Dietary Shift Alter Microbiota Composition and Activity in a Mucin-Associated in vitro Model of the Piglet Colon (MPigut-IVM) Simulating Weaning Transition

Raphaële Gresse , Frédérique Chaucheyras-Durand , Juan J Garrido , Sylvain Denis , Angeles Jiménez-Marín et al.
Frontiers in Microbiology, 2021, 12, ⟨10.3389/fmicb.2021.703421⟩
Journal articles hal-03413919v1
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Effect of diet on shiga toxin-producting Escherichia coli (STEC) growth and survival in rumen and abomasum fluids

Karima Boukhors , Nathalie Pradel , Jean Pierre Girardeau , Valérie Livrelli , Ahmed M. O. Saïd et al.
Veterinary Research, 2002, 33 (4), pp.405-412. ⟨10.1051/vetres:2002026⟩
Journal articles hal-02681212v1
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Effets des polluants environnementaux et alimentaires sur le microbiote intestinal

Sophie Comtet-Marre , Pascale Mosoni , Pierre Peyret
Cahiers de Nutrition et de Diététique, 2020, 55 (5), pp.255-262. ⟨10.1016/j.cnd.2020.07.004⟩
Journal articles hal-02913566v1
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Liquid anti-solvent recrystallization to enhance dissolution of CRS 74, a new antiretroviral drug

Suenia de Paiva Lacerda , Fabienne Espitalier , Valerie Hoffart , Maria-Inês Ré
Drug Development and Industrial Pharmacy, 2015, 41 (11), pp.1910-1920. ⟨10.3109/03639045.2015.1020812⟩
Journal articles hal-01611005v1
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Dynamic Succession of Microbiota during Ensiling of Whole Plant Corn Following Inoculation with Lactobacillus buchneri and Lactobacillus hilgardii Alone or in Combination

Pascal Drouin , Julien Tremblay , Frédérique Chaucheyras-Durand
Microorganisms, 2019, 7 (12), pp.595. ⟨10.3390/microorganisms7120595⟩
Journal articles hal-02375686v1
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Atomization of denatured whey proteins as a novel and simple way to improve oral drug delivery system properties

Hassana Hsein , Ghislain Garrait , Muhammad Ashraful Mumin , Eric Beyssac , Valerie Hoffart et al.
International Journal of Biological Macromolecules, 2017, 105 (1), pp.801 - 809. ⟨10.1016/j.ijbiomac.2017.07.114⟩
Journal articles hal-01658637v1
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The sequence capture by hybridization: a new approach for revealing the potential of mono-aromatic hydrocarbons bioattenuation in a deep oligotrophic aquifer

Magali Ranchou-Peyruse , Cyrielle Gasc , Marion Guignard , Thomas Aüllo , David Dequidt et al.
Microbial Biotechnology, 2017, 10 (2), pp.469-479. ⟨10.1111/1751-7915.12426⟩
Journal articles hal-01658765v1
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The nAG sensor nagC regulates LEE gene expression and contributes to gut colonization by escherichia coli O157:H7

Guillaume Le Bihan , Jean-Félix Sicard , Philippe Garneau , Annick Bernalier , Alain Gobert et al.
Frontiers in Cellular and Infection Microbiology, 2017, 7, pp.134. ⟨10.3389/fcimb.2017.00134⟩
Journal articles hal-01604986v1
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Discrimination of Escherichia coli and Shigella spp. by Nuclear Magnetic Resonance Based Metabolomic Characterization of Culture Media

Gilles Rautureau , Tony L Palama , Isabelle Canard , Caroline Mirande , Sonia Chatellier et al.
ACS Infectious Diseases, 2019, 5 (11), pp.1879-1886. ⟨10.1021/acsinfecdis.9b00199⟩
Journal articles hal-02324344v1
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Differential miRNA-Gene Expression in M Cells in Response to Crohn’s Disease-Associated AIEC

Anaïs Larabi , Laurène Salesse , Charlotte Cordonnier , Lucie Etienne-Mesmin , Nicolas Barnich et al.
Microorganisms, 2020, 8 (8), pp.1205. ⟨10.3390/microorganisms8081205⟩
Journal articles hal-02935826v1
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Environmental Pollutant Benzo[a]Pyrene Impacts the Volatile Metabolome and Transcriptome of the Human Gut Microbiota

Clémence Defois , Jérémy Ratel , Sylvain Denis , Bérénice Batut , Réjane Beugnot et al.
Frontiers in Microbiology, 2017, 8, ⟨10.3389/fmicb.2017.01562⟩
Journal articles hal-01658582v1
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Intestinal pathogenic escherichia coli: Insights for vaccine development

Maricarmen Rojas Lopez , Ricardo Monterio , Mariagrazia Pizza , Mickael M. Desvaux , Roberto Rosini et al.
Frontiers in Microbiology, 2018, 9, ⟨10.3389/fmicb.2018.00440⟩
Journal articles hal-02626999v1
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Identification of lipid A deacylase as a novel, highly conserved and protective antigen against enterohemorrhagic Escherichia coli

Maricarmen Rojas Lopez , Manuele Martinelli , Valentina Brandi , Grégory Jubelin , Fabio Polticelli et al.
Scientific Reports, 2019, 9 (1), ⟨10.1038/s41598-019-53197-z⟩
Journal articles hal-02619933v1
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Procyanidin—Cell Wall Interactions within Apple Matrices Decrease the Metabolization of Procyanidins by the Human Gut Microbiota and the Anti-Inflammatory Effect of the Resulting Microbial Metabolome In Vitro

Carine Le Bourvellec , Priscilla Carolinne Bagano Vilas Boas , Pascale Lepercq , Sophie Comtet-Marre , Pauline Auffret et al.
Nutrients, 2019, 11 (3), pp.664. ⟨10.3390/nu11030664⟩
Journal articles hal-02154352v1
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OCaPPI-Db: an oligonucleotide probe database for pathogen identification through hybridization capture

Cyrielle Gasc , Antony Constantin , Faouzi Jaziri , Pierre Peyret
Database - The journal of Biological Databases and Curation, 2017, ⟨10.1093/database/baw172⟩
Journal articles hal-01608266v1
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Rare Coding Variants in ANGPTL6 Are Associated with Familial Forms of Intracranial Aneurysm

Romain Bourcier , Solena Le Scouarnec , Stephanie Bonnaud , Matilde Karakachoff , Emmanuelle Bourcereau et al.
American Journal of Human Genetics, 2018, 102 (1), pp.133 - 141. ⟨10.1016/j.ajhg.2017.12.006⟩
Journal articles hal-01808225v1
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RiboTaxa: combined approaches for rRNA genes taxonomic resolution down to the species level from metagenomics data revealing novelties

Oshma Chakoory , Sophie Comtet-Marre , Pierre Peyret
NAR Genomics and Bioinformatics, 2022, 4 (3), ⟨10.1093/nargab/lqac070⟩
Journal articles hal-03794089v1
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Heterogeneity of shiga toxin-producing Escherichia coli strains isolated from hemolytic-uremic syndrome patients, cattle, and food samples in central france

Nathalie Pradel , Karima Boukhors , Yolande Bertin , Christiane Forestier , Christine Martin et al.
Applied and Environmental Microbiology, 2001, 67 (6), pp.2460-2468. ⟨10.1128/AEM.67.6.2460-2468.2001⟩
Journal articles hal-02679603v1
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Ruminant microbiota : research status and impacts of microbiota on animal performance and health

Asma Zened , Evelyne Forano , Céline Delbes , Isabelle Verdier-Metz , Diego Morgavi et al.
INRAE Productions Animales, 2020, 33 (4), pp.249-260. ⟨10.20870/productions-animales.2020.33.4.4597⟩
Journal articles hal-03227796v1
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Fungal dye-decolorizing peroxidase diversity: roles in either intra- or extracellular processes

Martino Adamo , Enrico Büttner , Harald Kellner , Patricia Luis , Sophie Comtet-Marre et al.
Applied Microbiology and Biotechnology, 2022, 106 (8), pp.2993-3007. ⟨10.1007/s00253-022-11923-0⟩
Journal articles hal-03650390v1
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Comparative genomics highlights the unique biology of Methanomassiliicoccales, a Thermoplasmatales-related seventh order of methanogenic archaea that encodes pyrrolysine.

Guillaume Borrel , Nicolas Parisot , Hugh Harris , Eric Peyretaillade , Nadia Gaci et al.
BMC Genomics, 2014, 15 (1), pp.679. ⟨10.1186/1471-2164-15-679⟩
Journal articles pasteur-01059404v1
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Bacteriophages as Antimicrobial Agents? Proteomic Insights on Three Novel Lytic Bacteriophages Infecting ESBL-Producing Escherichia coli

Sadika Dkhili , Miguel Ribeiro , Salma Ghariani , Houssem Ben Yahia , Mélanie Hillion et al.
Omics : a journal of integrative biology, 2021, 25 (10), pp.626 - 640. ⟨10.1089/omi.2021.0122⟩
Journal articles hal-03413934v1
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Saccharomyces Cerevisiae Var Boulardii CNCM I–1079 Reduces Expression of Genes Involved in Inflammatory Response in Porcine Cells Challenged by Enterotoxigenic E. Coli and Influences Bacterial Communities in an In Vitro Model of the Weaning Piglet Colon

Raphaële Gresse , Juan J Garrido , Angeles Jiménez-Marín , Sylvain Denis , Tom van de Wiele et al.
Antibiotics, 2021, 10 (9), pp.1101. ⟨10.3390/antibiotics10091101⟩
Journal articles hal-03414560v1
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Mixed mucosal-parenteral immunizations with the broadly conserved pathogenic Escherichia coli antigen SslE induce a robust mucosal and systemic immunity without affecting the murine intestinal microbiota

Ilham Naili , Juliette Vinot , Barbara C. Baudner , Annick Bernalier-Donadille , Mariagrazia Pizza et al.
Vaccine, 2019, 37 (2), pp.314-324. ⟨10.1016/j.vaccine.2018.10.008⟩
Journal articles hal-02320239v1
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InlL from listeria monocytogenes Is involved in biofilm formation and adhesion to mucin

Magdalena Popowska , Agata Krawczyk-Balska , Rafał Ostrowski , Mickael M. Desvaux
Frontiers in Microbiology, 2017, 8, pp.660. ⟨10.3389/fmicb.2017.00660⟩
Journal articles hal-01602737v1
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Tryptophan: A gut microbiota-derived metabolites regulating inflammation

Lucie Etienne-Mesmin , Benoit Chassaing , Andrew T Gewirtz
World Journal of Gastrointestinal Pharmacology and Therapeutics, 2017, 8 (1), pp.7. ⟨10.4292/wjgpt.v8.i1.7⟩
Journal articles hal-01658590v1
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Early-life microbiota exposure restricts myeloid-derived suppressor cell-driven colonic tumorigenesis Running Title: Early-life microbiota restricts colonic tumorigenesis

Akihito Harusato , Emilie Viennois , Lucie Etienne-Mesmin , Shingo Matsuyama , Hirohito Abo et al.
Cancer Immunology Research, 2019, 7 (4), pp.544-551. ⟨10.1158/2326-6066.CIR-18-0444⟩
Journal articles hal-02335668v1