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Document type : Journal articles
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The Prediction and Validation of Small CDSs Expand the Gene Repertoire of the Smallest Known Eukaryotic Genomes

Abdel Belkorchia , Cyrielle Gasc , Valérie Polonais , Nicolas Parisot , Nicolas Gallois et al.
PLoS ONE, 2015, 10 (9), pp.1-12. ⟨10.1371/journal.pone.0139075⟩
Journal articles hal-01247479v1
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Evaluation of Anti-Candida Potential of Piper nigrum Extract in Inhibiting Growth, Yeast-Hyphal Transition, Virulent Enzymes, and Biofilm Formation

Claudia Patrícia Bravo-Chaucanés , Yerly Vargas-Casanova , Luis Carlos Chitiva-Chitiva , Andrés Ceballos-Garzon , Geison Modesti-Costa et al.
Journal of Fungi, 2022, 8 (8), 21 p. ⟨10.3390/jof8080784⟩
Journal articles hal-03768893v1
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The Human Gut Chip ‘‘HuGChip’’, an Explorative Phylogenetic Microarray for Determining Gut Microbiome Diversity at Family Level

William Tottey , Jeremie Denonfoux , Faouzi Jaziri , Nicolas Parisot , Mohiedine Missaoui et al.
PLoS ONE, 2013, 449, pp.804 - 804. ⟨10.1371/journal.pone.0062544.s004⟩
Journal articles hal-01612757v1
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Effects of Saccharomyces cerevisiae, medium and forage type and their interactions on in vitro ruminal fermentation

A. Russouw , E. Chevaux , F. Chaucheyras-Durand , G. Esposito , E. Raffrenato et al.
Heliyon, 2020, 6 (9), pp.e05028. ⟨10.1016/j.heliyon.2020.e05028⟩
Journal articles hal-02957333v1
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Investigation of Escherichia coli O157:H7 Survival and Interaction with Meal Components during Gastrointestinal Digestion

Diane de La Pomelie , Sabine Leroy , Régine Talon , Philippe Ruiz , Philippe Gatellier et al.
Journal articles hal-03408256v1
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Identification of a variety of staphylococcus species by matrix-assisted laser desorption ionization-time of flight mass spectrometry

Damien Dubois , David Leyssene , Jean-Paul Chacornac , Markus Kostrzewa , Pierre Olivier Schmit et al.
Journal of Clinical Microbiology, 2010, 48 (3), pp.941-945. ⟨10.1128/JCM.00413-09⟩
Journal articles hal-02661791v1
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Electrochemical Skin Conductance and Quantitative Sensory Testing on Fibromyalgia

Gisèle Pickering , Alexanne Achard , Alexandrine Corriger , Sophia Sickout‐arondo , Nicolas Macian et al.
Pain Practice, 2020, 20 (4), pp.348-356. ⟨10.1111/papr.12857⟩
Journal articles hal-02935679v1
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A Pediococcus strain to rescue honeybees by decreasing Nosema ceranae- and pesticide-induced adverse effects

Elodie Peghaire , Anne Mone , Frédéric Delbac , Didier Debroas , Frédérique Chaucheyras-Durand et al.
Biology, 2020, 163, pp.138-146. ⟨10.1016/j.pestbp.2019.11.006⟩
Journal articles hal-02935692v1
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Evaluation of Antioxidant and Antibacterial Activities of White Mulberry (Morus alba L.) Fruit Extracts

Sureeporn Suriyaprom , Thida Kaewkod , Itthayakorn Promputtha , Mickael M. Desvaux , Yingmanee Tragoolpua et al.
Plants, 2021, 10 (12), pp.2736. ⟨10.3390/plants10122736⟩
Journal articles hal-03510840v1
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A global phylogenomic and metabolic reconstruction of the large intestine bacterial community of domesticated cattle

S. Teseo , S. Otani , C. Brinch , Sabine Leroy , Philippe Ruiz et al.
Microbiome, 2022, 10 (1), pp.155. ⟨10.1186/s40168-022-01357-1⟩
Journal articles hal-03794085v1
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The human intestinal microbiota of constipated-predominant irritable bowel syndrome patients exhibits anti-inflammatory properties

Alain Gobert , Giulia Sagrestani , Eve Delmas , Keith T. Wilson , Thomas G. Verriere et al.
Scientific Reports, 2016, 6, ⟨10.1038/srep39399⟩
Journal articles hal-01606792v1
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Transcriptional analysis reveals specific niche factors and response to environmental stresses of enterohemorrhagic Escherichia coli O157:H7 in bovine digestive contents

Audrey Segura , Yolande Bertin , Alexandra Durand , Mhammed Benbakkar , Evelyne Forano et al.
BMC Microbiology, 2021, 21 (1), ⟨10.1186/s12866-021-02343-7⟩
Journal articles hal-03400443v1
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Lentils and Yeast Fibers: A New Strategy to Mitigate Enterotoxigenic Escherichia coli (ETEC) Strain H10407 Virulence?

Thomas Sauvaitre , Florence van Herreweghen , Karen Delbaere , Claude Durif , Josefien van Landuyt et al.
Nutrients, 2022, 14 (10), pp.2146. ⟨10.3390/nu14102146⟩
Journal articles hal-03697172v1
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Modulation of enterohaemorrhagic escherichia coli survival and virulence in the human gastrointestinal tract

Grégory Jubelin , Mickael M. Desvaux , Stephanie Schüller , Lucie Etienne-Mesmin , Maite Muniesa et al.
Microorganisms, 2018, 6 (4), pp.115. ⟨10.3390/microorganisms6040115⟩
Journal articles hal-02621247v1
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Differential homotypic and heterotypic interactions of antigen 43 (Ag43) variants in autotransporter-mediated bacterial autoaggregation

Valentin Ageorges , Marion Schiavone , Grégory Jubelin , Nelly Caccia , Philippe Ruiz et al.
Scientific Reports, 2019, 9 (1), pp.11100. ⟨10.1038/s41598-019-47608-4⟩
Journal articles hal-02335796v1
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Hybridization capture reveals microbial diversity missed using current profiling methods

Cyrielle Gasc , Pierre Peyret
Microbiome, 2018, 6 (1), ⟨10.1186/s40168-018-0442-3⟩
Journal articles hal-02621574v1
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Lactobacillus paracasei CNCM I-3689 reduces vancomycin-resistant Enterococcus persistence and promotes Bacteroidetes resilience in the gut following antibiotic challenge

Laureen Crouzet , Muriel Derrien , Claire Cherbuy , Sandra Plancade , Mélanie Foulon et al.
Scientific Reports, 2018, 8 (1), ⟨10.1038/s41598-018-23437-9⟩
Journal articles hal-02623143v1
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Biofilm formation of listeria monocytogenes strains under food processing environments and pan-genome-wide association study

Bo-Hyung Lee , Sophie Cole , Stéphanie Badel-Berchoux , Laurent Guillier , Benjamin Felix et al.
Frontiers in Microbiology, 2019, 10, ⟨10.3389/fmicb.2019.02698⟩
Journal articles hal-02486306v1
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Enterohemorrhagic Escherichia coli pathogenesis: role of Long polar fimbriae in Peyer's patches interactions

Charlotte Cordonnier , Lucie Etienne-Mesmin , Jonathan Thevenot , Amandine Rougeron , Sandra Renier et al.
Scientific Reports, 2017, 7 (1), pp.1-14. ⟨10.1038/srep44655⟩
Journal articles hal-01607483v1
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Planning a one health case study to evaluate methicillin resistant staphylococcus aureus and its economic burden in Portugal

Gilberto Igrejas , Susana Correia , Vanessa Silva , Michel Hébraud , Manuela Caniça et al.
Frontiers in Microbiology, 2018, 9, ⟨10.3389/fmicb.2018.02964⟩
Journal articles hal-02623920v1
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Cell Wall Hydrolases in Bacteria: Insight on the Diversity of Cell Wall Amidases, Glycosidases and Peptidases Toward Peptidoglycan

Aurore Vermassen , Sabine Leroy , Régine Talon , Christian Provot , Magdalena Popowska et al.
Frontiers in Microbiology, 2019, 1, ⟨10.3389/fmicb.2019.00331⟩
Journal articles hal-02335804v1
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Microbiota Composition and Functional Profiling Throughout the Gastrointestinal Tract of Commercial Weaning Piglets

Raphaële Gresse , Frédérique Chaucheyras Durand , Lysiane Dunière , Stéphanie Blanquet-Diot , Evelyne Forano et al.
Microorganisms, 2019, 7 (9), pp.343. ⟨10.3390/microorganisms7090343⟩
Journal articles hal-02335688v1
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Tetracycline Gene Transfer in Staphylococcus xylosus in situ During Sausage Fermentation

Sabine Leroy , Souad Christieans , Régine Talon
Frontiers in Microbiology, 2019, 10, pp.392. ⟨10.3389/fmicb.2019.00392⟩
Journal articles hal-02320311v1
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A Mix of Dietary Fibres Changes Interorgan Nutrients Exchanges and Muscle-Adipose Energy Handling in Overfed Mini-Pigs

Ahmed Ben Mohamed , Didier Remond , Andreu Gual-Grau , Annick Bernalier-Donnadille , Frédéric Capel et al.
Nutrients, 2021, 13 (12), pp.4202. ⟨10.3390/nu13124202⟩
Journal articles hal-03512482v1
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From Chihuahua to Saint-Bernard: how did digestion and microbiota evolve with dog sizes

Charlotte Deschamps , Delphine Humbert , Jürgen Zentek , Sylvain Denis , Nathalie Priymenko et al.
International Journal of Biological Sciences, 2022, 18 (13), pp.5086 - 5102. ⟨10.7150/ijbs.72770⟩
Journal articles hal-03754354v1
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Draft genome sequence and characterization of commensal Escherichia coli strain BG1 isolated from bovine gastro-intestinal tract

Audrey Segura , Pauline Auffret , Christophe C. Klopp , Yolande Bertin , Evelyne Forano et al.
Standards in Genomic Sciences, 2017, 12 (1), ⟨10.1186/s40793-017-0272-0⟩
Journal articles hal-02626891v1
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Draft Genome Sequence of Enterohemorrhagic Escherichia coli O157:H7 Strain MC2 Isolated from Cattle in France

Pauline Auffret , Audrey Segura , Yolande Bertin , Christophe C. Klopp , Olivier Bouchez et al.
Genome Announcements, 2017, 5 (40), ⟨10.1128/genomeA.01097-17⟩
Journal articles hal-01658407v1
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Weaning-associated feed deprivation stress causes microbiota disruptions in a novel mucin-containing in vitro model of the piglet colon (MPigut-IVM)

Raphaële Gresse , Frédérique Chaucheyras-Durand , Sylvain Denis , Martin Beaumont , Tom van de Wiele et al.
Journal of Animal Science and Biotechnology , 2021, 12 (1), ⟨10.1186/s40104-021-00584-0⟩
Journal articles hal-03267076v1
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Unique Characteristics of the Pyrrolysine System in the 7th Order of Methanogens: Implications for the Evolution of a Genetic Code Expansion Cassette

Guillaume Borrel , Nadia Gaci , Pierre Peyret , Paul W. O'Toole , Simonetta Gribaldo et al.
Archaea, 2014, 2014, pp.1 - 11. ⟨10.1155/2014/374146⟩
Journal articles hal-01612761v1
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Large Scale Explorative Oligonucleotide Probe Selection for Thousands of Genetic Groups on a Computing Grid: Application to Phylogenetic Probe Design Using a Curated Small Subunit Ribosomal RNA Gene Database

Faouzi Jaziri , Eric Peyretaillade , Mohieddine Missaoui , Nicolas Parisot , Sébastien Cipière et al.
The Scientific World Journal, 2014, 2014, pp.350487. ⟨10.1155/2014/350487⟩
Journal articles hal-01110169v2