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220 Results
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Sharp Tractability Borderlines for Finding Connected Motifs in Vertex-Colored Graphs34th International Colloquium on Automata, Languages and Programming (ICALP 2007), 2007, Wroclaw, Poland. pp.340-351
Conference papers
hal-00417928v1
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Finding Occurrences of Protein Complexes in Protein-Protein Interaction GraphsJournal of Discrete Algorithms, 2009, 7 (1), pp.90-101
Journal articles
hal-00416394v1
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Algorithmic Aspects of Heterogeneous Biological Networks ComparisonCOCOA 2011, 2011, Zhangjiajie, China. pp.272-286, ⟨10.1007/978-3-642-22616-8_22⟩
Conference papers
hal-00606375v1
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Extending the Hardness of RNA Secondary Structure Comparison1st International Symposium on Combinatorics, Algorithms, Probabilistic and Experimental Methodologies (ESCAPE 2007), Apr 2007, Hangzhou, China. pp.140-151
Conference papers
hal-00418248v1
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DExTaR: Detection of Exact Tandem Repeats based on the de Bruijn graphIEEE International Conference on Bioinformatics and Biomedicine (BIBM 2014), Nov 2014, Belfast, Ireland. pp.90-93, ⟨10.1109/BIBM.2014.6999134⟩
Conference papers
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A large-scale analysis for significance assessment of frequencies relative to potentially strong sigma 70 promoters - comparison of 32 prokaryotic genomes2007
Preprints, Working Papers, ...
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Multiscale modeling of alternative splicing regulationInternational Workshop on Computational Methods in Systems Biology - CMSB'03, 2003, Rovereto, Italie, pp.75-87
Conference papers
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A metabolic approach to study algal-bacterial interactions in changing environments.Molecular Ecology, 2014, 23 (7), pp.1656-60. ⟨10.1111/mec.12670⟩
Journal articles
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Revealing and analyzing networks of marine microbial ecosystemsConférence Jacques Monod - Marine Ecosystems Biology, 2015, Roscoff, France
Conference papers
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Routing permutations in the hypercubeInternational Workshop on Graph-Theoretic Concepts in Computer Science WG'99, Jun 1999, Ascona, Switzerland. pp.179-190
Conference papers
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Decomposing Cubic Graphs into Connected Subgraphs of Size ThreeThe 22nd International Computing and Combinatorics Conference (COCOON), Aug 2016, Ho Chi Minh City, Vietnam
Conference papers
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Comparing RNA Structures: Towards an Intermediate Model Between the EDIT and the LAPCS ProblemsBrazilian Symposium on Bioinformatics (BSB 2007), Aug 2007, Angra dos Reis, Brazil. pp.101-112
Conference papers
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Seasonal and annual reoccurrence in betaproteobacterial ammonia-oxidizing bacterial population structure.Environmental Microbiology, 2011, 13 (4), pp.872-886. ⟨10.1111/j.1462-2920.2010.02362.x⟩
Journal articles
istex
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Maximum weight edge-constrained matchingsDiscrete Applied Mathematics, 2008, 156 (5), pp.662-672. ⟨10.1016/j.dam.2007.08.021⟩
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On The Stack-Size of General TriesRAIRO - Theoretical Informatics and Applications (RAIRO: ITA), 2001, 35, pp.163--185
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A Study of Minimum Gossip GraphsDiscrete Mathematics, 2000, 215 (1--3), pp.33--57
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Pattern discovery allowing gaps, substitution matrices and multiple score functionsWorkshop on Algorithms in BioInformatics (WABI), Sep 2003, Budapest, Hungary. pp.129-145
Conference papers
hal-00487245v1
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Exemplar Longest Common SubsequencesInt. Workshop on Bioinformatics Research and Applications (IWBRA), 2006, United States. pp.622-629
Conference papers
hal-00620296v1
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Genes Order and Phylogenetic Reconstruction: Application to $\gamma$-Proteobacteria3rd Annual RECOMB Satellite Workshop on Comparative Genomics (RECOMB-CG'05), Sep 2005, Dublin, Ireland, Ireland. pp.11-20
Conference papers
hal-00620362v1
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The breakpoint distance for signed sequences1st Conference on Algorithms and Computational Methods for biochemical and Evolutionary Networks (CompBioNets'04), Dec 2004, Recife, Brazil, Brazil. pp.3-16
Conference papers
hal-00620356v1
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On the Approximability of Comparing Genomes with Duplicates2nd Workshop on Algorithms and Computation (WALCOM 2008), 2008, Dhaka, Bangladesh. pp.34-45
Conference papers
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Maximal sub-triangulation in preprocessing phylogenetic dataSoft Computing, 2006, 10 (5), pp.461-468. ⟨10.1007/s00500-005-0507-7⟩
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Inapproximability of (1,2)-Exemplar DistanceIEEE/ACM Transactions on Computational Biology and Bioinformatics, 2013, 10 (6), pp.1384-1390. ⟨10.1109/TCBB.2012.144⟩
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A Cubic-Vertex Kernel for Flip Consensus TreeAlgorithmica, 2014, 68 (1), pp.81-108. ⟨10.1007/s00453-012-9663-1⟩
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Systems biology approaches at cellular level in the model organism Ectocarpus siliculosus to better understand brown algal physiologyEsil 2012: algal post-genomics, Apr 2012, Roscoff, France
Conference papers
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An ASP application in integrative biology: identification of functional gene unitsLPNMR - 12th Conference on Logic Programming and Nonmonotonic Reasoning - 2013, Sep 2013, Corunna, Spain
Conference papers
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Statistical Properties of Factor OraclesJournal of Discrete Algorithms, 2010, LNCS, 9 (2011), pp.59-66. ⟨10.1007/978-3-642-02441-2⟩
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Model of the delayed translation of cyclin B maternal mRNA after sea urchin fertilizationMolecular Reproduction and Development, 2016, ⟨10.1002/mrd.22746⟩
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Approximation algorithms for sorting by length-weighted prefix and suffix operationsTheoretical Computer Science, 2015, 593, pp.26-41. ⟨10.1016/j.tcs.2015.05.039⟩
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Integrating heterogeneous knowledges for understanding biological behaviors: a probabilistic approach2007
Preprints, Working Papers, ...
hal-00199362v1
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