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A comprehensive collection of systems biology data characterizing the host response to viral infection.

Brian D. Aevermann , Brett E. Pickett , Sanjeev Kumar , Edward B. Klem , Sudhakar Agnihothram et al.
Scientific Data, 2014, 1, pp.140033. ⟨10.1038/sdata.2014.33⟩
Journal articles hal-03961036v1

Mineralocorticoid receptor mutations differentially affect individual gene expression profiles in pseudohypoaldosteronism type 1.

Fábio L. Fernandes-Rosa , Edwige-Ludiwyne Hubert , Jérome Fagart , Nicolas Tchitchek , Debora Gomes et al.
The Journal of clinical endocrinology and metabolism, 2011, 96 (3), pp.E519--527. ⟨10.1210/jc.2010-1486⟩
Journal articles hal-03961027v1

Improving the efficiency of multidimensional scaling in the analysis of high-dimensional data using singular value decomposition.

Christophe Bécavin , Nicolas Tchitchek , Colette Mintsa-Eya , Annick Lesne , Arndt Benecke et al.
Bioinformatics (Oxford, England), 2011, 27 (10), pp.1413--1421. ⟨10.1093/bioinformatics/btr143⟩
Journal articles hal-03961026v1

Systems approaches to influenza-virus host interactions and the pathogenesis of highly virulent and pandemic viruses.

Marcus J. Korth , Nicolas Tchitchek , Arndt G. Benecke , Michael G. Katze
Seminars in immunology, 2013, 25 (3), pp.228--239. ⟨10.1016/j.smim.2012.11.001⟩
Journal articles hal-03961025v1

Annotation of long non-coding RNAs expressed in collaborative cross founder mice in response to respiratory virus infection reveals a new class of interferon-stimulated transcripts.

Laurence Josset , Nicolas Tchitchek , Lisa E. Gralinski , Martin T. Ferris , Amie J. Eisfeld et al.
RNA biology, 2014, 11 (7), pp.875--890. ⟨10.4161/rna.29442⟩
Journal articles hal-03961024v1

H7N9 and other pathogenic avian influenza viruses elicit a three-pronged transcriptomic signature that is reminiscent of 1918 influenza virus and is associated with lethal outcome in mice.

Juliet Morrison , Laurence Josset , Nicolas Tchitchek , Jean Chang , Jessica A. Belser et al.
Journal of virology, 2014, 88 (18), pp.10556--10568. ⟨10.1128/JVI.00570-14⟩
Journal articles hal-03961023v1

Sequencing, annotation and analysis of the Syrian hamster (Mesocricetus auratus) transcriptome.

Nicolas Tchitchek , David Safronetz , Angela L. Rasmussen , Craig Martens , Kimmo Virtaneva et al.
PLoS One, 2014, 9 (11), pp.e112617. ⟨10.1371/journal.pone.0112617⟩
Journal articles hal-03961022v1

Identification of Vaccine-Altered Circulating B Cell Phenotypes Using Mass Cytometry and a Two-Step Clustering Analysis.

David Pejoski , Nicolas Tchitchek , André Rodriguez Pozo , Jamila Elhmouzi-Younes , Rahima Yousfi-Bogniaho et al.
Journal of immunology (Baltimore, Md. : 1950), 2016, 196 (11), pp.4814--4831. ⟨10.4049/jimmunol.1502005⟩
Journal articles hal-03961021v1

Myocardial Gene Expression Profiling to Predict and Identify Cardiac Allograft Acute Cellular Rejection: The GET-Study.

Diane Bodez , Hakim Hocini , Nicolas Tchitchek , Pascaline Tisserand , Nicole Benhaiem et al.
PLoS One, 2016, 11 (11), pp.e0167213. ⟨10.1371/journal.pone.0167213⟩
Journal articles hal-03961020v1

Attenuated and vectored vaccines protect nonhuman primates against Chikungunya virus.

Pierre Roques , Karl Ljungberg , Beate M. Kümmerer , Leslie Gosse , Nathalie Dereuddre-Bosquet et al.
JCI insight, 2017, 2 (6), pp.e83527. ⟨10.1172/jci.insight.83527⟩
Journal articles hal-03961019v1

In depth comparative phenotyping of blood innate myeloid leukocytes from healthy humans and macaques using mass cytometry.

Jamila Elhmouzi-Younes , Jean-Louis Palgen , Nicolas Tchitchek , Simon Delandre , Inana Namet et al.
Cytometry. Part A : the journal of the International Society for Analytical Cytology, 2017, 91 (10), pp.969--982. ⟨10.1002/cyto.a.23107⟩
Journal articles hal-03961018v1

Navigating in the vast and deep oceans of high-dimensional biological data.

Nicolas Tchitchek
Methods (San Diego, Calif.), 2018, 132, pp.1--2. ⟨10.1016/j.ymeth.2017.11.009⟩
Journal articles hal-03961017v1

Correction: Stage-specific IFN-induced and IFN gene expression reveal convergence of type I and type II IFN and highlight their role in both acute and chronic stage of pathogenic SIV infection.

Nadia Echebli , Nicolas Tchitchek , Stéphanie Dupuy , Timothée Bruel , Caroline Passaes et al.
PLoS One, 2018, 13 (2), pp.e0193629. ⟨10.1371/journal.pone.0193629⟩
Journal articles hal-03961016v1

CytoBackBone: an algorithm for merging of phenotypic information from different cytometric profiles.

Adrien Leite Pereira , Olivier Lambotte , Roger Le Grand , Antonio Cosma , Nicolas Tchitchek et al.
Bioinformatics (Oxford, England), 2019, 35 (20), pp.4187--4189. ⟨10.1093/bioinformatics/btz212⟩
Journal articles hal-03961015v1

Characterization of Leukocytes From HIV-ART Patients Using Combined Cytometric Profiles of 72 Cell Markers.

Adrien Leite Pereira , Nicolas Tchitchek , Olivier Lambotte , Roger Le Grand , Antonio Cosma et al.
Frontiers in immunology, 2019, 10, pp.1777. ⟨10.3389/fimmu.2019.01777⟩
Journal articles hal-03961014v1

Characterization of Phenotypes and Functional Activities of Leukocytes From Rheumatoid Arthritis Patients by Mass Cytometry.

Adrien Leite Pereira , Samuel Bitoun , Audrey Paoletti , Gaetane Nocturne , Ernesto Marcos Lopez et al.
Frontiers in immunology, 2019, 10, pp.2384. ⟨10.3389/fimmu.2019.02384⟩
Journal articles hal-03961013v1

Publisher Correction: Progenitors from the central nervous system drive neurogenesis in cancer.

Philippe Mauffrey , Nicolas Tchitchek , Vilma Barroca , Alexis-Pierre Bemelmans , Virginie Firlej et al.
Nature, 2020, 577 (7792), pp.E10. ⟨10.1038/s41586-019-1837-4⟩
Journal articles hal-03961012v1

Bacnet: a user-friendly platform for building multi-omics websites.

Loane Danès , Nicolas Tchitchek , Christophe Bécavin
Bioinformatics (Oxford, England), 2021, 37 (9), pp.1335--1336. ⟨10.1093/bioinformatics/btaa828⟩
Journal articles hal-03961011v1

Modulation of Cell Surface Receptor Expression by Modified Vaccinia Virus Ankara in Leukocytes of Healthy and HIV-Infected Individuals

Adrien Leite Pereira , Quentin Jouhault , Ernesto Marcos Lopez , Antonio Cosma , Olivier Lambotte et al.
Frontiers in Immunology, 2020, 11 (6), pp.579. ⟨10.3389/fimmu.2020.02096⟩
Journal articles hal-03960814v1

Low-dose IL-2 in children with recently diagnosed type 1 diabetes: a Phase I/II randomised, double-blind, placebo-controlled, dose-finding study

Michelle Rosenzwajg , Randa Salet , Roberta Lorenzon , Nicolas Tchitchek , Alexandra Roux et al.
Diabetologia, 2020, 63 (9), pp.1808-1821. ⟨10.1007/s00125-020-05200-w⟩
Journal articles hal-03345047v1
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Rituximab plus belimumab in non-infectious refractory cryoglobulinemia vasculitis: A pilot study

David Saadoun , Amine Ghembaza , Sebastien Riviere , Arsene Mekinian , Jonathan Boutemy et al.
Journal of Autoimmunity, 2021, 116, pp.102577 -. ⟨10.1016/j.jaut.2020.102577⟩
Journal articles hal-03493570v1
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La fibrose rétropéritonéale idiopathique

A. Le Joncour , D. Saadoun , P. Cacoub
La Revue de Médecine Interne, 2020, 41, pp.822 - 828. ⟨10.1016/j.revmed.2020.06.013⟩
Journal articles hal-03493507v1
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Risk Factors and Prevention of Pneumocystis jirovecii Pneumonia in Patients With Autoimmune and Inflammatory Diseases

Amine Ghembaza , Mathieu Vautier , Patrice Cacoub , Valérie Pourcher , David Saadoun et al.
Chest, 2020, 158, pp.2323 - 2332. ⟨10.1016/j.chest.2020.05.558⟩
Journal articles hal-03493466v1

Machine Learning Predicts Response to TNF Inhibitors in Rheumatoid Arthritis: Results on the ESPOIR and ABIRISK Cohorts

Vincent Bouget , Julien Duquesne , Signe Hassler , Paul-Henry Cournède , Bruno Fautrel et al.
RMD Open : Rheumatic & Musculoskeletal Diseases, 2022, 8 (2), pp.e002442. ⟨10.1136/rmdopen-2022-002442⟩
Journal articles hal-03892158v1
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Juvenile Neuropsychiatric Systemic Lupus Erythematosus: Identification of Novel Central Neuroinflammation Biomarkers

Mathilde Labouret , Stefania Costi , Vincent Bondet , Vincent Trebossen , Enora Le Roux et al.
Journal of Clinical Immunology, 2022, ⟨10.1007/s10875-022-01407-1⟩
Journal articles pasteur-03889611v1

Intravenous Immunoglobulins Tapering and Withdrawal in Systemic Capillary Leak Syndrome (Clarkson Disease)

Quentin Moyon , Marc Pineton de Chambrun , Marie Gousseff , Alexis Mathian , Miguel Hie et al.
Journal of Allergy and Clinical Immunology: In Practice, 2022, 10 (11), pp.2889-2895. ⟨10.1016/j.jaip.2022.07.006⟩
Journal articles hal-03888981v1

SARS-CoV-2 Outbreak in Immune-Mediated Inflammatory Diseases: The Euro-COVIMID Multicentre Cross-Sectional Study

David Saadoun , Matheus Vieira , Mathieu Vautier , Xenofon Baraliakos , Ioana Andreica et al.
The Lancet Rheumatology, 2021, 3 (7), pp.e481-e488. ⟨10.1016/S2665-9913(21)00112-0⟩
Journal articles hal-03879106v1
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M‐CSF‐mediated macrophage development is dominantly inhibited by NOD2 signaling for replenishment of immunogenic dendritic cells

Camille Chauvin , Daniel Alvarez-Simon , Paul Régnier , Katarina Radulovic , Olivier Boulard et al.
6th European Congress of Immunology, Sep 2021, Belgrade, Serbia. 51, pp.307, P‐0672. ⟨10.1002/eji.202170200⟩
Conference poster hal-03870668v1
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A Thermostable Oral SARS-CoV-2 Vaccine Induces Mucosal and Protective Immunity

Bertrand Bellier , Alicia Saura , Lucas A Luján , Cecilia R Molina , Hugo D Luján et al.
Frontiers in Immunology, 2022, 13, pp.837443. ⟨10.3389/fimmu.2022.837443⟩
Journal articles hal-03868328v1
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RepSeq Data Representativeness and Robustness Assessment by Shannon Entropy

Wahiba Chaara , Ariadna Gonzalez-Tort , Laura-Maria Florez , David Klatzmann , Encarnita Mariotti-Ferrandiz et al.
Frontiers in Immunology, 2018, 9, pp.1038. ⟨10.3389/fimmu.2018.01038⟩
Journal articles hal-03868198v1