metagWGS

metagWGS is a workflow dedicated to the analysis of metagenomic data. It allows assembly, taxonomic annotation, and functional annotation of predicted genes. Since release 2.3, binning step with the possibility of cross-alignment is included. It has been developed in collaboration with several CATI BIOS4biol agents. Funded by Antiselfish Project (Labex Ecofect), ExpoMicoPig project (France Futur elevage) and SeqOccIn project (CPER - Occitanie Toulouse / FEDER), ATB_Biofilm funded by PNREST Anses, France genomique (ANR-10-INBS-09-08) and Resalab Ouest.

Mots clés

Metagenomic Workflow Long reads Short reads

Domaines

Biodiversité et Ecologie

Claire Hoede : Connectez-vous pour contacter le contributeur

https://hal.inrae.fr/hal-04694918

Soumis le : mercredi 11 septembre 2024-17:16:27

Dernière modification le : lundi 16 décembre 2024-17:00:03

Dates et versions

hal-04694918 , version 1 (11-09-2024)

Identifiants

HAL Id : hal-04694918 , version 1
DOI : 10.5281/zenodo.10007876
SWHID : swh:1:dir:4ac81dae5fd868ea7969796dea30de32c76ff170;origin=https://hal.archives-ouvertes.fr/hal-04694918;visit=swh:1:snp:2c5d39d733f88b185b285b21578d288c1f9d9ffa;anchor=swh:1:rel:a55bc4a3ca3ff027a6ded3b1de3fb7bcff1f0bc7;path=/

version : v2.4.2
softwareLicence : GNU Affero General Public License v3.0
programmingLanguage : Python, bash, nextflow
codeRepository : https://forgemia.inra.fr/genotoul-bioinfo/metagwgs
platform : Linux

Citer

Jean Mainguy, Maïna Vienne, Joanna Fourquet, Pierre Martin, Vincent Darbot, et al.. metagWGS. 2024, ⟨swh:1:dir:4ac81dae5fd868ea7969796dea30de32c76ff170;origin=https://hal.archives-ouvertes.fr/hal-04694918;visit=swh:1:snp:2c5d39d733f88b185b285b21578d288c1f9d9ffa;anchor=swh:1:rel:a55bc4a3ca3ff027a6ded3b1de3fb7bcff1f0bc7;path=/⟩. ⟨hal-04694918⟩

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metagWGS

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