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Article Dans Une Revue Nature Protocols Année : 2021

Generic acquisition protocol for quantitative MRI of the spinal cord

Julien Cohen-Adad (1, 2, 3) , Eva Alonso-Ortiz (1) , Mihael Abramovic (4) , Carina Arneitz (4) , Nicole Atcheson (5) , Laura Barlow (6) , Robert L. Barry (7, 8, 9) , Markus Barth (5) , Marco Battiston (10) , Christian Büchel (11) , Matthew Budde (12) , Virginie Callot (13, 14) , Anna J. E. Combes (15) , Benjamin de Leener (1, 16) , Maxime Descoteaux (17, 18) , Paulo Loureiro de Sousa (19) , Marek Dostál (20) , Julien Doyon (21) , Adam Dvorak (6) , Falk Eippert (22) , Karla R. Epperson (23) , Kevin S. Epperson (23) , Patrick Freund (24) , Jürgen Finsterbusch (11) , Alexandru Foias (1) , Michela Fratini (25) , Issei Fukunaga (26) , Claudia A. M. Gandini Wheeler-Kingshott (10, 27, 28) , Giancarlo Germani (28) , Guillaume Gilbert (29) , Federico Giove (25, 30) , Charley Gros (1, 5) , Francesco Grussu (10, 31) , Akifumi Hagiwara (26) , Pierre-Gilles Henry (32) , Tomáš Horák (33) , Masaaki Hori (34) , James Joers (32) , Kouhei Kamiya (35) , Haleh Karbasforoushan (36, 37) , Miloš Keřkovský (20) , Ali Khatibi (21, 38) , Joo-Won Kim (39) , Nawal Kinany (40, 41) , Hagen Kitzler (42) , Shannon Kolind (6) , Yazhuo Kong (43, 44, 45) , Petr Kudlička (33) , Paul Kuntke (42) , Nyoman D. Kurniawan (46) , Slawomir Kusmia (47, 10, 48) , René Labounek (49, 50) , Maria Marcella Laganà , Cornelia Laule (6) , Christine S. Law (23) , Christophe Lenglet (32) , Tobias Leutritz (22) , Yaou Liu (51) , Sara Llufriu (52) , Sean Mackey (23) , Eloy Martinez-Heras (52) , Loan Mattera , Igor Nestrasil (32) , Kristin P. O’grady (15) , Nico Papinutto (53) , Daniel Papp (1, 45) , Deborah Pareto (31) , Todd B. Parrish (54) , Anna Pichiecchio (27, 28) , Ferran Prados (10, 55) , Àlex Rovira (31) , Marc J. Ruitenberg (5) , Rebecca S. Samson (10) , Giovanni Savini (28) , Maryam Seif (24, 22) , Alan C. Seifert (39) , Alex K. Smith (45) , Seth A. Smith (15) , Zachary A. Smith (56) , Elisabeth Solana (52) , Yuichi Suzuki (35) , George Tackley (47) , Alexandra Tinnermann (11) , Jan Valošek (57) , Dimitri van de Ville (40, 41) , Marios C. Yiannakas (10) , Kenneth A. Ii Weber (23) , Nikolaus Weiskopf (22, 58) , Richard G. Wise (47, 59) , Patrik O. Wyss (4) , Junqian Xu (39)
1 EPM - École Polytechnique de Montréal
2 UQAM - Université du Québec à Montréal = University of Québec in Montréal
3 Mila - Quebec AI Institute
4 Swiss Paraplegic Research = Schweizer Paraplegiker-Stiftung
5 UQ [All campuses : Brisbane, Dutton Park Gatton, Herston, St Lucia and other locations] - The University of Queensland
6 UBC - University of British Columbia
7 Massachusetts General Hospital [Boston]
8 HMS - Harvard Medical School [Boston]
9 MIT - Massachusetts Institute of Technology
10 UCL - University College of London [London]
11 UKE - Universitaetsklinikum Hamburg-Eppendorf = University Medical Center Hamburg-Eppendorf [Hamburg]
12 MCW - Medical College of Wisconsin [Milwaukee]
13 CRMBM - Centre de résonance magnétique biologique et médicale
14 CEMEREM - Centre d'Exploration Métabolique par Résonance Magnétique [Hôpital de la Timone - APHM]
15 Vanderbilt University Medical Center [Nashville]
16 CHU Sainte Justine [Montréal]
17 UdeS - Université de Sherbrooke
18 Centre d'Imagerie Moléculaire de Sherbrooke
19 ICube - Laboratoire des sciences de l'ingénieur, de l'informatique et de l'imagerie
20 MUNI - Masaryk University [Brno]
21 McGill University = Université McGill [Montréal, Canada]
22 IMPNSC - Max Planck Institute for Human Cognitive and Brain Sciences [Leipzig]
23 Stanford University School of Medicine [CA, USA]
24 UZH - Universität Zürich [Zürich] = University of Zurich
25 IRCCS Santa Lucia Foundation
26 Juntendo University School of Medicine [Tokyo, Japan]
27 UNIPV - Università degli Studi di Pavia = University of Pavia
28 IRCCS Mondino Foundation
29 Philips Healthcare [Markham]
30 Enrico Fermi Center for Study and Research | Museo Storico della Fisica e Centro Studi e Ricerche Enrico Fermi
31 Vall d'Hebron University Hospital [Barcelona]
32 CMRR - Center for Magnetic Resonance Research [Minneapolis]
33 CEITEC MU - Central European Institute of Technology [Brno]
34 Toho University Omori Medical Center [Tokyo]
35 UTokyo - The University of Tokyo
36 Northwestern University Feinberg School of Medicine
37 Stanford University
38 University of Birmingham [Birmingham]
39 MSSM - Icahn School of Medicine at Mount Sinai [New York]
40 EPFL - Ecole Polytechnique Fédérale de Lausanne
41 UNIGE - Université de Genève = University of Geneva
42 TU Dresden - Technische Universität Dresden = Dresden University of Technology
43 CAS - Chinese Academy of Sciences [Beijing]
44 UCAS - University of Chinese Academy of Sciences [Beijing]
45 University of Oxford
46 USQ - University of Southern Queensland
47 Cardiff University
48 MRI Unit - Epilepsy Society [Buckinghamshire]
49 Departments of Ophthalmology and Pediatrics, University of Minnesota, Minneapolis, MN
50 University Hospital Olomouc [Czech Republic]
51 CUMS - Capital University of Medical Sciences [Beijing]
52 UB - Universitat de Barcelona
53 UC San Francisco - University of California [San Francisco]
54 Feinberg School of Medicine
55 UOC - Universitat Oberta de Catalunya [Barcelona]
56 OUHSC - University of Oklahoma Health Sciences Center
57 Palacky University Olomouc
58 Leipzig University / Universität Leipzig
59 University "G. d'Annunzio" of Chieti-Pescara [Chieti and Pescara, Italy]
Guillaume Gilbert
Maria Marcella Laganà
  • Fonction : Auteur
Loan Mattera
  • Fonction : Auteur

Résumé

Quantitative spinal cord (SC) magnetic resonance imaging (MRI) presents many challenges, including a lack of standardized imaging protocols. Here we present a prospectively harmonized quantitative MRI protocol, which we refer to as the spine generic protocol, for users of 3T MRI systems from the three main manufacturers: GE, Philips and Siemens. The protocol provides guidance for assessing SC macrostructural and microstructural integrity: T1-weighted and T2-weighted imaging for SC cross-sectional area computation, multi-echo gradient echo for gray matter cross-sectional area, and magnetization transfer and diffusion weighted imaging for assessing white matter microstructure. In a companion paper from the same authors, the spine generic protocol was used to acquire data across 42 centers in 260 healthy subjects. The key details of the spine generic protocol are also available in an open-access document that can be found at https://github.com/spine-generic/protocols . The protocol will serve as a starting point for researchers and clinicians implementing new SC imaging initiatives so that, in the future, inclusion of the SC in neuroimaging protocols will be more common. The protocol could be implemented by any trained MR technician or by a researcher/clinician familiar with MRI acquisition.
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Dates et versions

hal-03402844 , version 1 (22-11-2021)

Identifiants

Citer

Julien Cohen-Adad, Eva Alonso-Ortiz, Mihael Abramovic, Carina Arneitz, Nicole Atcheson, et al.. Generic acquisition protocol for quantitative MRI of the spinal cord. Nature Protocols, 2021, 16 (10), pp.4611-4632. ⟨10.1038/s41596-021-00588-0⟩. ⟨hal-03402844⟩
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