ProCARs: Progressive Reconstruction of Ancestral Gene Orders
Amandine Perrin
,
Jean-Stéphane Varré
,
Samuel Blanquart
,
Aïda Ouangraoua
ISCB-Latin America , Oct 2014, Belo Horizonte, Brazil
Communication dans un congrès
hal-01083841v1
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DE-kupl: exhaustive capture of biological variation in RNA-seq data through k-mer decomposition
Jérôme Audoux
,
Nicolas Philippe
,
Rayan Chikhi
,
Mikael Salson
,
Mélina Gallopin
et al.
Article dans une revue
hal-01728770v1
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BLight: efficient exact associative structure for k-mers
Antoine Limasset
,
Camille Marchet
,
Mael Kerbiriou
Article dans une revue
hal-03443183v1
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MAGNOLIA: multiple alignment of protein-coding and structural RNA sequences.
Arnaud Fontaine
,
Antoine de Monte
,
Hélène Touzet
Article dans une revue
hal-00823594v1
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Assisted transcriptome reconstruction and splicing orthology
Samuel Blanquart
,
Jean-Stéphane Varré
,
Paul Guertin
,
Amandine Perrin
,
Anne Bergeron
et al.
BMC Genomics , 2016, Proceedings of the 14th Annual Research in Computational Molecular Biology (RECOMB) Comparative Genomics Satellite Workshop: genomics, 17 (Suppl 10), pp.786.
⟨10.1186/s12864-016-3103-6⟩
Article dans une revue
hal-01396410v1
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STRONG: metagenomics strain resolution on assembly graphs
Antoine Limasset
,
Christopher Quince
,
Sergey Nurk
,
Sebastien Raguideau
,
Robert James
et al.
Article dans une revue
hal-03443171v1
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MATAM: reconstruction of phylogenetic marker genes from short sequencing reads in metagenomes
Pierre Pericard
,
Yoann Dufresne
,
Loïc Couderc
,
Samuel Blanquart
,
Hélène Touzet
et al.
Article dans une revue
hal-01646297v1
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Data structures based on k -mers for querying large collections of sequencing data sets
Camille Marchet
,
Christina Boucher
,
Simon Puglisi
,
Paul Medvedev
,
Mikaël Salson
et al.
Article dans une revue
hal-03165261v1
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Computational identification of protein-coding sequences by comparative analysis
Arnaud Fontaine
,
Hélène Touzet
Article dans une revue
hal-00823601v1
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A Coverage Criterion for Spaced Seeds and Its Applications to Support Vector Machine String Kernels and $k$-Mer Distances
Laurent Noé
,
Donald E. K. Martin
Article dans une revue
hal-01083204v1
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Assessment of Common and Emerging Bioinformatics Pipelines for Targeted Metagenomics
Léa Siegwald
,
Hélène Touzet
,
Yves Lemoine
,
David Hot
,
Christophe Audebert
et al.
Article dans une revue
hal-01575755v1
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Comparative assessment of long-read error correction software applied to Nanopore RNA-sequencing data
Leandro Lima
,
Camille Marchet
,
Ségolène Caboche
,
Corinne da Silva
,
Benjamin Istace
et al.
Article dans une revue
hal-02394395v1
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TgAP2IX-5 is a key transcriptional regulator of the asexual cell cycle division in Toxoplasma gondii
Asma S. Khelifa
,
Cecilia Guillen Sanchez
,
Kevin M. Lesage
,
Ludovic Huot
,
Thomas Mouveaux
et al.
Article dans une revue
hal-03107529v2
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Multi-loci diagnosis of acute lymphoblastic leukaemia with high-throughput sequencing and bioinformatics analysis
Yann Ferret
,
Aurélie Caillault
,
Shéhérazade Sebda
,
Marc Duez
,
Nathalie Grardel
et al.
Article dans une revue
hal-01279160v1
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Diagnostic et suivi des leucémies aiguës lymphoblastiques (LAL) par séquençage haut-débit (HTS)
Nathalie Grardel
,
Mikaël Salson
,
Aurélie Caillault
,
Marc Duez
,
Céline Villenet
et al.
Congrès de la Société Française d'Hématologie (SFH) , 2014, Paris, France
Communication dans un congrès
hal-01100152v1
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Bioinformatics tools for the discovery of new lipopeptides with biocontrol applications
Maude Pupin
,
Areski Flissi
,
Philippe Jacques
,
Valérie Leclère
Article dans une revue
hal-01937890v1
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Prediction of New Bioactive Molecules using a Bayesian Belief Network
Ammar Abdo
,
Valérie Leclère
,
Philippe Jacques
,
Naomie Salim
,
Maude Pupin
et al.
Article dans une revue
hal-01090611v1
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Médiation Scientifique : une facette de nos métiers de la recherche
Antoine Rousseau
,
Aurélie Darnaud
,
Brice Goglin
,
Céline Acharian
,
Christine Leininger
et al.
[Interne] Inria. 2013, pp.34
Rapport
hal-00804915v1
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Biomanycores, open-source parallel code for many-core bioinformatics
Mathieu Giraud
,
Stéphane Janot
,
Jean-Frédéric Berthelot
,
Charles Deltel
,
Laetitia Jourdan
et al.
Bioinformatics Open Source Conference (BOSC 2011) , 2011, Vienne, Austria
Communication dans un congrès
inria-00623390v1
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CONSENT: Scalable self-correction of long reads with multiple sequence alignment
Pierre Morisse
,
Camille Marchet
,
Antoine Limasset
,
Thierry Lecroq
,
Arnaud Lefebvre
et al.
Recomb-Seq 2019 - 9th RECOMB Satellite Workshop on Massively Parallel Sequencing , May 2019, Washinton, United States. pp.1-9,
⟨10.1101/546630⟩
Communication dans un congrès
hal-02435116v1
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Compacting de Bruijn graphs from sequencing data quickly and in low memory
Rayan Chikhi
,
Antoine Limasset
,
Paul Medvedev
Article dans une revue
hal-01395704v1
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Bipartite Graphs of Small Readability
Rayan Chikhi
,
Vladan Jovičić
,
Stefan Kratsch
,
Paul Medvedev
,
Martin Milanic
et al.
COCOON 2018 - The 24th International Computing and Combinatorics Conference , Jul 2018, Qingdao, China
Communication dans un congrès
hal-01935562v1
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Genome scaffolding with PE-contaminated mate-pair libraries
Kristoffer Sahlin
,
Rayan Chikhi
,
Lars Arvestad.
Communication dans un congrès
hal-01236176v1
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A new fingerprint to predict nonribosomal peptides activity.
Ammar Hasan Abdo
,
Ségolène Caboche
,
Valérie Leclère
,
Philippe Jacques
,
Maude Pupin
et al.
Article dans une revue
hal-00750002v1
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Nonribosomal peptide synthetase with a unique iterative-alternative-optional mechanism catalyzes amonabactin synthesis in Aeromonas
Qassim Esmaeel
,
Mickael Chevalier
,
Gabrielle Chataigne
,
Rathinasamy Subashkumar
,
Philippe Jacques
et al.
Article dans une revue
hal-01601408v1
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A time- and cost-effective strategy to sequence mammalian Y Chromosomes: an application to the de novo assembly of gorilla Y
Marta Tomaszkiewicz
,
Samarth Rangavittal
,
Monika Cechova
,
Rebeca Campos Sanchez
,
Howard William Fescemyer
et al.
Article dans une revue
hal-01395702v1
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One-Step Next-Generation Sequencing of Immunoglobulin and T-Cell Receptor Gene Recombinations for MRD Marker Identification in Acute Lymphoblastic Leukemia
Patrick Villarese
,
Chrystelle Abdo
,
Matthieu Bertrand
,
Florian Thonier
,
Mathieu Giraud
et al.
Anton W. Langerak.
Immunogenetics. Methods and Protocols , 2453, Springer, pp.43-59, 2022, Methods in Molecular Biology, 978-1-0716-2115-8.
⟨10.1007/978-1-0716-2115-8_3⟩
Chapitre d'ouvrage
hal-03684695v1
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Complete Sequence, Multichromosomal Architecture and Transcriptome Analysis of the Solanum tuberosum Mitochondrial Genome
Jean-Stéphane Varré
,
Nunzio d'Agostino
,
Pascal Touzet
,
Sophie Gallina
,
Rachele Tamburino
et al.
Article dans une revue
hal-02298474v1
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SortMeRNA: Fast and accurate filtering of ribosomal RNAs in metatranscriptomic data.
Evguenia Kopylova
,
Laurent Noé
,
Héléne Touzet
Article dans une revue
hal-00748990v1
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Tandem Halving Problems by DCJ
Antoine Thomas
,
Aïda Ouangraoua
,
Jean-Stéphane Varré
Communication dans un congrès
hal-00749019v1
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