Data structures based on k -mers for querying large collections of sequencing data sets
Camille Marchet
,
Christina Boucher
,
Simon Puglisi
,
Paul Medvedev
,
Mikaël Salson
et al.
Article dans une revue
hal-03165261v1
Actions
Partager
Gmail
Facebook
Twitter
LinkedIn
More
Assisted transcriptome reconstruction and splicing orthology
Samuel Blanquart
,
Jean-Stéphane Varré
,
Paul Guertin
,
Amandine Perrin
,
Anne Bergeron
et al.
BMC Genomics , 2016, Proceedings of the 14th Annual Research in Computational Molecular Biology (RECOMB) Comparative Genomics Satellite Workshop: genomics, 17 (Suppl 10), pp.786.
⟨10.1186/s12864-016-3103-6⟩
Article dans une revue
hal-01396410v1
Actions
Partager
Gmail
Facebook
Twitter
LinkedIn
More
DE-kupl: exhaustive capture of biological variation in RNA-seq data through k-mer decomposition
Jérôme Audoux
,
Nicolas Philippe
,
Rayan Chikhi
,
Mikael Salson
,
Mélina Gallopin
et al.
Article dans une revue
hal-01728770v1
Actions
Partager
Gmail
Facebook
Twitter
LinkedIn
More
BLight: efficient exact associative structure for k-mers
Antoine Limasset
,
Camille Marchet
,
Mael Kerbiriou
Article dans une revue
hal-03443183v1
Actions
Partager
Gmail
Facebook
Twitter
LinkedIn
More
MATAM: reconstruction of phylogenetic marker genes from short sequencing reads in metagenomes
Pierre Pericard
,
Yoann Dufresne
,
Loïc Couderc
,
Samuel Blanquart
,
Hélène Touzet
et al.
Article dans une revue
hal-01646297v1
Actions
Partager
Gmail
Facebook
Twitter
LinkedIn
More
STRONG: metagenomics strain resolution on assembly graphs
Antoine Limasset
,
Christopher Quince
,
Sergey Nurk
,
Sebastien Raguideau
,
Robert James
et al.
Article dans une revue
hal-03443171v1
Actions
Partager
Gmail
Facebook
Twitter
LinkedIn
More
TgAP2IX-5 is a key transcriptional regulator of the asexual cell cycle division in Toxoplasma gondii
Asma S. Khelifa
,
Cecilia Guillen Sanchez
,
Kevin M. Lesage
,
Ludovic Huot
,
Thomas Mouveaux
et al.
Article dans une revue
hal-03107529v2
Actions
Partager
Gmail
Facebook
Twitter
LinkedIn
More
Multi-loci diagnosis of acute lymphoblastic leukaemia with high-throughput sequencing and bioinformatics analysis
Yann Ferret
,
Aurélie Caillault
,
Shéhérazade Sebda
,
Marc Duez
,
Nathalie Grardel
et al.
Article dans une revue
hal-01279160v1
Actions
Partager
Gmail
Facebook
Twitter
LinkedIn
More
Comparative assessment of long-read error correction software applied to Nanopore RNA-sequencing data
Leandro Lima
,
Camille Marchet
,
Ségolène Caboche
,
Corinne da Silva
,
Benjamin Istace
et al.
Article dans une revue
hal-02394395v1
Actions
Partager
Gmail
Facebook
Twitter
LinkedIn
More
Assessment of Common and Emerging Bioinformatics Pipelines for Targeted Metagenomics
Léa Siegwald
,
Hélène Touzet
,
Yves Lemoine
,
David Hot
,
Christophe Audebert
et al.
Article dans une revue
hal-01575755v1
Actions
Partager
Gmail
Facebook
Twitter
LinkedIn
More
Bioinformatics tools for the discovery of new lipopeptides with biocontrol applications
Maude Pupin
,
Areski Flissi
,
Philippe Jacques
,
Valérie Leclère
Article dans une revue
hal-01937890v1
Actions
Partager
Gmail
Facebook
Twitter
LinkedIn
More
Compacting de Bruijn graphs from sequencing data quickly and in low memory
Rayan Chikhi
,
Antoine Limasset
,
Paul Medvedev
Article dans une revue
hal-01395704v1
Actions
Partager
Gmail
Facebook
Twitter
LinkedIn
More
Médiation Scientifique : une facette de nos métiers de la recherche
Antoine Rousseau
,
Aurélie Darnaud
,
Brice Goglin
,
Céline Acharian
,
Christine Leininger
et al.
[Interne] Inria. 2013, pp.34
Rapport
hal-00804915v1
Actions
Partager
Gmail
Facebook
Twitter
LinkedIn
More
CONSENT: Scalable self-correction of long reads with multiple sequence alignment
Pierre Morisse
,
Camille Marchet
,
Antoine Limasset
,
Thierry Lecroq
,
Arnaud Lefebvre
et al.
Recomb-Seq 2019 - 9th RECOMB Satellite Workshop on Massively Parallel Sequencing , May 2019, Washinton, United States. pp.1-9,
⟨10.1101/546630⟩
Communication dans un congrès
hal-02435116v1
Actions
Partager
Gmail
Facebook
Twitter
LinkedIn
More
Standardized next-generation sequencing of immunoglobulin and T-cell receptor gene recombinations for MRD marker identification in acute lymphoblastic leukaemia; a EuroClonality-NGS validation study
Monika Brüggemann
,
Michaela Kotrova
,
Henrik Knecht
,
Jack Bartram
,
Myriam Boudjogrha
et al.
Article dans une revue
hal-02169053v1
Actions
Partager
Gmail
Facebook
Twitter
LinkedIn
More
High-Throughput Immunogenetics for Clinical and Research Applications in Immunohematology: Potential and Challenges.
Anton W Langerak
,
Monika Brüggemann
,
Frédéric Davi
,
Nikos Darzentas
,
Jacques J M van Dongen
et al.
Article dans une revue
hal-01516289v1
Actions
Partager
Gmail
Facebook
Twitter
LinkedIn
More
From Sequences to Graphs: Discrete Methods and Structures for Bioinformatics
Annie Chateau
,
Mikaël Salson
Ouvrages
hal-03920813v1
Actions
Partager
Gmail
Facebook
Twitter
LinkedIn
More
String Processing and Information Retrieval
Thierry Lecroq
,
Hélène Touzet
Ouvrages
hal-03368750v1
Actions
Partager
Gmail
Facebook
Twitter
LinkedIn
More
Indexing labeled sequences
Tatiana Rocher
,
Mathieu Giraud
,
Mikaël Salson
Article dans une revue
hal-01743104v1
Actions
Partager
Gmail
Facebook
Twitter
LinkedIn
More
Faster exact distributions of pattern statistics through sequential elimination of states
Donald E. K. Martin
,
Laurent Noé
Article dans une revue
hal-01237045v1
Actions
Partager
Gmail
Facebook
Twitter
LinkedIn
More
Fast and scalable minimal perfect hashing for massive key sets
Antoine Limasset
,
Guillaume Rizk
,
Rayan Chikhi
,
Pierre Peterlongo
16th International Symposium on Experimental Algorithms , Jun 2017, London, United Kingdom. pp.1 - 11
Communication dans un congrès
hal-01566246v1
Actions
Partager
Gmail
Facebook
Twitter
LinkedIn
More
Best hits of 11110110111: model-free selection and parameter-free sensitivity calculation of spaced seeds
Laurent Noé
Article dans une revue
hal-01467970v1
Actions
Partager
Gmail
Facebook
Twitter
LinkedIn
More
Indexer un ensemble de séquences ADN annotées
Tatiana Rocher
,
Mathieu Giraud
,
Mikael Salson
JOBIM , Jun 2016, Lyon, France
Communication dans un congrès
hal-01576319v1
Actions
Partager
Gmail
Facebook
Twitter
LinkedIn
More
Efficient approximations of RNA kinetics landscape using non-redundant sampling
Juraj Michálik
,
Hélène Touzet
,
Yann Ponty
ISMB/ECCB - 25th Annual international conference on Intelligent Systems for Molecular Biology/16th European Conference on Computational Biology - 2017 , Jul 2017, Prague, Czech Republic. pp.i283 - i292,
⟨10.1093/bioinformatics/btx269⟩
Communication dans un congrès
hal-01500115v1
Actions
Partager
Gmail
Facebook
Twitter
LinkedIn
More
Practical dynamic de Bruijn graphs
Alan Kuhnle
,
Victoria G. Crawford
,
Christina Boucher
,
Rayan Chikhi
,
Travis Gagie
et al.
Article dans une revue
hal-01935559v1
Actions
Partager
Gmail
Facebook
Twitter
LinkedIn
More
Algorithmes pour la reconstruction de séquences de marqueurs conservés dans des données de métagénomique
Pierre Pericard
Thèse
tel-01738687v2
Actions
Partager
Gmail
Facebook
Twitter
LinkedIn
More
Smiles2Monomers: a link between chemical and biological structures for polymers
Yoann Dufresne
,
Laurent Noé
,
Valérie Leclère
,
Maude Pupin
Article dans une revue
hal-01250619v1
Actions
Partager
Gmail
Facebook
Twitter
LinkedIn
More
Debugging long-read genome and metagenome assemblies using string graph analysis
Pierre Marijon
,
Jean-Stéphane Varré
,
Rayan Chikhi
JOBIM 2017- Journées Ouvertes en Biologie, Informatique et Mathématiques , Jul 2017, Lille, France.
Poster de conférence
hal-01574824v1
Actions
Partager
Gmail
Facebook
Twitter
LinkedIn
More
Norine: update of the nonribosomal peptide resource
Areski Flissi
,
Emma Ricart
,
Clémentine Campart
,
Mickael Chevalier
,
Yoann Dufresne
et al.
Article dans une revue
hal-02376009v1
Actions
Partager
Gmail
Facebook
Twitter
LinkedIn
More
Sneak peek at the -tig sequences: useful sequences built from nucleic acid data
Camille Marchet
2022
Pré-publication, Document de travail
hal-03768446v2
Actions
Partager
Gmail
Facebook
Twitter
LinkedIn
More