Genome Halving by Block Interchange
Antoine Thomas
,
Aïda Ouangraoua
,
Jean-Stéphane Varré
BIOINFORMATICS , Feb 2012, Lisboa, Portugal. pp.58-65
Communication dans un congrès
hal-00749026v1
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CRAC: an integrated approach to the analysis of RNA-seq reads
Nicolas Philippe
,
Mikaël Salson
,
Thérèse Commes
,
Eric Rivals
Article dans une revue
inserm-00850972v1
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A new fingerprint to predict nonribosomal peptides activity.
Ammar Hasan Abdo
,
Ségolène Caboche
,
Valérie Leclère
,
Philippe Jacques
,
Maude Pupin
et al.
Article dans une revue
hal-00750002v1
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A time- and cost-effective strategy to sequence mammalian Y Chromosomes: an application to the de novo assembly of gorilla Y
Marta Tomaszkiewicz
,
Samarth Rangavittal
,
Monika Cechova
,
Rebeca Campos Sanchez
,
Howard William Fescemyer
et al.
Article dans une revue
hal-01395702v1
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Nonribosomal peptide synthetase with a unique iterative-alternative-optional mechanism catalyzes amonabactin synthesis in Aeromonas
Qassim Esmaeel
,
Mickael Chevalier
,
Gabrielle Chataigne
,
Rathinasamy Subashkumar
,
Philippe Jacques
et al.
Article dans une revue
hal-01601408v1
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One-Step Next-Generation Sequencing of Immunoglobulin and T-Cell Receptor Gene Recombinations for MRD Marker Identification in Acute Lymphoblastic Leukemia
Patrick Villarese
,
Chrystelle Abdo
,
Matthieu Bertrand
,
Florian Thonier
,
Mathieu Giraud
et al.
Anton W. Langerak.
Immunogenetics. Methods and Protocols , 2453, Springer, pp.43-59, 2022, Methods in Molecular Biology, 978-1-0716-2115-8.
⟨10.1007/978-1-0716-2115-8_3⟩
Chapitre d'ouvrage
hal-03684695v1
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Traitement des données - introduction
Iovka Boneva
,
Héléne Touzet
Les Big Data à découvert , 2016
Chapitre d'ouvrage
hal-01574692v1
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A Scalable Indexing Solution to Mine Huge Genomic Sequence Collections
Eric Rivals
,
Nicolas Philippe
,
Mikael Salson
,
Martine Léonard
,
Thérèse Commes
et al.
ERCIM News , 2012, 2012 (89), pp.20-21
Article dans une revue
lirmm-00712653v1
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TFM-Explorer: mining cis-regulatory regions in genomes
Tonon Laurie
,
Hélène Touzet
,
Jean-Stéphane Varré
Article dans une revue
hal-00823465v1
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Indexing De Bruijn graphs with minimizers
Camille Marchet
,
Maël Kerbiriou
,
Antoine Limasset
Recomb-Seq 2019 - 9th RECOMB Satellite Workshop on Massively Parallel Sequencing , May 2019, Whashinton, United States. pp.1-16,
⟨10.1101/546309⟩
Communication dans un congrès
hal-02435086v1
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Minimally-overlapping words for sequence similarity search
Martin Frith
,
Laurent Noé
,
Gregory Kucherov
Article dans une revue
hal-03087470v1
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On the Levenshtein Automaton and the Size of the Neighborhood of a Word
Hélène Touzet
LATA 2016 - 10th International Conference on Language and Automata Theory and Applications , Mar 2016, Prague, Czech Republic. pp.207-218,
⟨10.1007/978-3-319-30000-9_16⟩
Communication dans un congrès
hal-01360482v1
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Searching for alternate RNA structures in genomic sequences
Azadeh Saffarian
,
Mathieu Giraud
,
Hélène Touzet
Communication dans un congrès
hal-01084319v1
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SimBA: A methodology and tools for evaluating the performance of RNA-Seq bioinformatic pipelines
Jérôme Audoux
,
Mikaël Salson
,
Christophe Grosset
,
Sacha Beaumeunier
,
Jean-Marc Holder
et al.
Article dans une revue
inserm-02437931v1
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Critical Assessment of Metagenome Interpretation: the second round of challenges
Fernando Meyer
,
Adrian Fritz
,
Zhi-Luo Deng
,
David Koslicki
,
Till Robin Lesker
et al.
Article dans une revue
hal-03832903v1
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Scalable long read self-correction and assembly polishing with multiple sequence alignment
Pierre Morisse
,
Camille Marchet
,
Antoine Limasset
,
Thierry Lecroq
,
Arnaud Lefebvre
et al.
Article dans une revue
hal-03210290v1
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DiNAMO: highly sensitive DNA motif discovery in high-throughput sequencing data
Chadi Saad
,
Laurent Noé
,
Hugues Richard
,
Julie Leclerc
,
Marie-Pierre Buisine
et al.
Article dans une revue
hal-01881466v1
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Algebraic Dynamic Programming 2.0
Robert Giegerich
,
Hélène Touzet
Workshop Haskell-Treffen an der Universität Leipzig , Jun 2013, Leipzig, Germany
Communication dans un congrès
hal-00857801v1
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On the readability of overlap digraphs
Rayan Chikhi
,
Paul Medvedev
,
Martin Milanič
,
Sofya Raskhodnikova
Article dans une revue
hal-01729749v1
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Norine, the knowledgebase dedicated to non-ribosomal peptides, is now open to crowdsourcing
Areski Flissi
,
Yoann Dufresne
,
Juraj Michalik
,
Laurie Tonon
,
Stéphane Janot
et al.
Article dans une revue
hal-01235996v1
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Prediction of Monomer Isomery in Florine: A Workflow Dedicated to Nonribosomal Peptide Discovery
Thibault Caradec
,
Maude Pupin
,
Aurélien Vanvlassenbroeck
,
Marie-Dominique Devignes
,
Malika Smaïl-Tabbone
et al.
Article dans une revue
hal-01090619v1
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Immunoglobulin Gene Mutational Status Assessment by Next Generation Sequencing in Chronic Lymphocytic Leukemia
Anne Langlois de Septenville
,
Myriam Boudjoghra
,
Clotilde Bravetti
,
Marine Armand
,
Mikaël Salson
et al.
Chapitre d'ouvrage
hal-03684717v1
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A dataset of sequences with manually curated V(D)J designations
Mikael Salson
,
Aurélie Caillault
,
Marc Duez
,
Yann Ferret
,
Alice Fievet
et al.
2016
Autre publication scientifique
hal-01331556v1
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Solutions d'amélioration des études de métagénomique ciblée
Léa Siegwald
Médecine humaine et pathologie. Université du Droit et de la Santé - Lille II, 2017. Français.
⟨NNT : 2017LIL2S006⟩
Thèse
tel-01575747v2
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ELECTOR : evaluator for long reads correction methods
Camille Marchet
,
Pierre Morisse
,
Lolita Lecompte
,
Arnaud Lefebvre
,
Thierry Lecroq
et al.
Article dans une revue
hal-02371117v1
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A survey of mapping algorithms in the long-reads era
Kristoffer Sahlin
,
Thomas Baudeau
,
Bastien Cazaux
,
Camille Marchet
2023
Pré-publication, Document de travail
hal-03934299v1
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REINDEER: efficient indexing of k-mer presence and abundance in sequencing datasets
Camille Marchet
,
Zamin Iqbal
,
Daniel Gautheret
,
Mikaël Salson
,
Rayan Chikhi
et al.
Article dans une revue
hal-03413006v1
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AllSome Sequence Bloom Trees
Chen Sun
,
Robert S. Harris
,
Rayan Chikhi
,
Paul Medvedev
RECOMB 2017 - 21st Annual International Conference on Research in Computational Molecular Biology , May 2017, Hong Kong, China.
⟨10.1007/978-3-319-56970-3_17⟩
Communication dans un congrès
hal-01575350v1
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Designing Efficient Spaced Seeds for SOLiD Read Mapping.
Laurent Noé
,
Marta Gîrdea
,
Gregory Kucherov
Article dans une revue
inria-00527029v1
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Improved Sensitivity And Reliability Of Anchor Based Genome Alignment
Raluca Uricaru
,
Célia Michotey
,
Laurent Noé
,
Hélène Chiapello
,
Eric Rivals
et al.
JOBIM'09 : Journées Ouvertes en Biologie, Informatique et Mathématiques , Jun 2009, Nantes, France. pp.31-36
Communication dans un congrès
lirmm-00407215v1
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