Genome Halving by Block Interchange
Antoine Thomas
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Aïda Ouangraoua
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Jean-Stéphane Varré
BIOINFORMATICS , Feb 2012, Lisboa, Portugal. pp.58-65
Communication dans un congrès
hal-00749026v1
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CRAC: an integrated approach to the analysis of RNA-seq reads
Nicolas Philippe
,
Mikaël Salson
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Thérèse Commes
,
Eric Rivals
Article dans une revue
inserm-00850972v1
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Seed design framework for mapping SOLiD reads
Laurent Noé
,
Marta L. Gîrdea
,
Gregory Kucherov
Communication dans un congrès
inria-00484642v1
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Algorithms for bioinformatics
Hélène Touzet
Mihai Pop; Hélène Touzet.
WABI , Sep 2015, Atlanta, United States. 9289,
Springer Verlag , 2015, 15th International Workshop, WABI 2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings,
⟨10.1007/978-3-662-48221-6⟩
Proceedings/Recueil des communications
hal-01228138v1
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Evidence for the Existence of Elaborate Enzyme Complexes in the Paleoarchean Era
Bernd Reisinger
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Josef Sperl
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Alexandra Holinski
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Veronika Schmid
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Chitra Rajendran
et al.
Article dans une revue
hal-00924047v1
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Palantir: a springboard for the analysis of secondary metabolite gene clusters in large-scale genome mining projects
Loïc Meunier
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Pierre Tocquin
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Luc Cornet
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Damien Sirjacobs
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Valérie Leclère
et al.
Article dans une revue
hal-03081849v1
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Iterative Spaced Seed Hashing: Closing the Gap Between Spaced Seed Hashing and k -mer Hashing
Enrico Petrucci
,
Laurent Noé
,
Cinzia Pizzi
,
Matteo Comin
Article dans une revue
hal-02910076v1
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Bioinformatics Tools for the Discovery of New Nonribosomal Peptides
Valérie Leclère
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Tilmann Weber
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Philippe Jacques
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Maude Pupin
Bradley S. Evans.
Nonribosomal Peptide and Polyketide Biosynthesis , 1401, Humana Press, pp.209-232, 2016, Methods in Molecular Biology, 978-1-4939-3373-0 978-1-4939-3375-4.
⟨10.1007/978-1-4939-3375-4_14⟩
Chapitre d'ouvrage
hal-01398960v1
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Perfect Hashing Structures for Parallel Similarity Searches
Tuan Tu Tran
,
Mathieu Giraud
,
Jean-Stéphane Varré
International Workshop on High Performance Computational Biology (HiCOMB 2015) / International Parallel and Distributed Processing Symposium (IPDPS 2015) , 2015, Hyderabad, India. pp.332-341,
⟨10.1109/IPDPSW.2015.105⟩
Communication dans un congrès
hal-01153893v1
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Norine: a powerful resource for novel nonribosomal peptide discovery
Maude Pupin
,
Qassim Esmaeel
,
Areski Flissi
,
Yoann Dufresne
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Philippe Jacques
et al.
Article dans une revue
hal-01250614v1
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Porechop_ABI: discovering unknown adapters in Oxford Nanopore Technology sequencing reads for downstream trimming
Quentin Bonenfant
,
Laurent Noé
,
Hélène Touzet
Article dans une revue
hal-03932719v1
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On the number of elements to reorder when updating a suffix array
Martine Léonard
,
Laurent Mouchard
,
Mikaël Salson
Article dans une revue
inria-00636066v1
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RNA Locally Optimal Secondary Structures
Azadeh Saffarian
,
Mathieu Giraud
,
Antoine de Monte
,
Hélène Touzet
Article dans une revue
hal-00756249v1
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Subset seed extension to Protein BLAST
Anna Gambin
,
Slawomir Lasota
,
Michal Startek
,
Maciej Sykulski
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Laurent Noé
et al.
Bioinformatics 2011 - International Conference on Bioinformatics Models, Methods and Algorithms , Jan 2011, Rome, Italy. pp.149-158,
⟨10.5220/0003147601490158⟩
Communication dans un congrès
inria-00609791v1
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Standardized next-generation sequencing of immunoglobulin and T-cell receptor gene recombinations for MRD marker identification in acute lymphoblastic leukaemia; a EuroClonality-NGS validation study
Monika Brüggemann
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Michaela Kotrova
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Henrik Knecht
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Jack Bartram
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Myriam Boudjogrha
et al.
Article dans une revue
hal-02169053v1
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High-Throughput Immunogenetics for Clinical and Research Applications in Immunohematology: Potential and Challenges.
Anton W Langerak
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Monika Brüggemann
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Frédéric Davi
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Nikos Darzentas
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Jacques J M van Dongen
et al.
Article dans une revue
hal-01516289v1
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New algorithmic and bioinformatic approaches for the analysis of data from high throughput sequencing
Evguenia Kopylova
Bioinformatics [q-bio.QM]. Université des Sciences et Technologie de Lille - Lille I, 2013. English.
⟨NNT : ⟩
Thèse
tel-00919185v2
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SortMeRNA: a new software to filter total RNA for metatranscriptomic or RNA analysis
Evguenia Kopylova
,
Laurent Noé
,
Helene Touzet
JOBIM - Journées Ouvertes en Biologie, Informatique et Mathématiques - 2012 , Jul 2012, Rennes, France
Communication dans un congrès
hal-00763792v1
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Computational and experimental evidence for the evolution of a (beta alpha)8-barrel protein from an ancestral quarter-barrel stabilised by disulfide bonds.
Markus Richter
,
Manal Bosnali
,
Linn Carstensen
,
Tobias Seitz
,
Helmut Durchschlag
et al.
Article dans une revue
hal-00755666v1
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From Sequences to Graphs: Discrete Methods and Structures for Bioinformatics
Annie Chateau
,
Mikaël Salson
Ouvrages
hal-03920813v1
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String Processing and Information Retrieval
Thierry Lecroq
,
Hélène Touzet
Ouvrages
hal-03368750v1
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Indexing labeled sequences
Tatiana Rocher
,
Mathieu Giraud
,
Mikaël Salson
Article dans une revue
hal-01743104v1
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Faster exact distributions of pattern statistics through sequential elimination of states
Donald E. K. Martin
,
Laurent Noé
Article dans une revue
hal-01237045v1
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Fast and scalable minimal perfect hashing for massive key sets
Antoine Limasset
,
Guillaume Rizk
,
Rayan Chikhi
,
Pierre Peterlongo
16th International Symposium on Experimental Algorithms , Jun 2017, London, United Kingdom. pp.1 - 11
Communication dans un congrès
hal-01566246v1
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Best hits of 11110110111: model-free selection and parameter-free sensitivity calculation of spaced seeds
Laurent Noé
Article dans une revue
hal-01467970v1
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Indexer un ensemble de séquences ADN annotées
Tatiana Rocher
,
Mathieu Giraud
,
Mikael Salson
JOBIM , Jun 2016, Lyon, France
Communication dans un congrès
hal-01576319v1
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Efficient approximations of RNA kinetics landscape using non-redundant sampling
Juraj Michálik
,
Hélène Touzet
,
Yann Ponty
ISMB/ECCB - 25th Annual international conference on Intelligent Systems for Molecular Biology/16th European Conference on Computational Biology - 2017 , Jul 2017, Prague, Czech Republic. pp.i283 - i292,
⟨10.1093/bioinformatics/btx269⟩
Communication dans un congrès
hal-01500115v1
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Practical dynamic de Bruijn graphs
Alan Kuhnle
,
Victoria G. Crawford
,
Christina Boucher
,
Rayan Chikhi
,
Travis Gagie
et al.
Article dans une revue
hal-01935559v1
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Algorithmes pour la reconstruction de séquences de marqueurs conservés dans des données de métagénomique
Pierre Pericard
Thèse
tel-01738687v2
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Smiles2Monomers: a link between chemical and biological structures for polymers
Yoann Dufresne
,
Laurent Noé
,
Valérie Leclère
,
Maude Pupin
Article dans une revue
hal-01250619v1
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