Recherche - Archive ouverte HAL Accéder directement au contenu

Filtrer vos résultats

189 Résultats
Image document

Genome Halving by Block Interchange

Antoine Thomas , Aïda Ouangraoua , Jean-Stéphane Varré
BIOINFORMATICS, Feb 2012, Lisboa, Portugal. pp.58-65
Communication dans un congrès hal-00749026v1
Image document

CRAC: an integrated approach to the analysis of RNA-seq reads

Nicolas Philippe , Mikaël Salson , Thérèse Commes , Eric Rivals
Genome Biology, 2013, 14 (3), pp.R30. ⟨10.1186/gb-2013-14-3-r30⟩
Article dans une revue inserm-00850972v1
Image document

Seed design framework for mapping SOLiD reads

Laurent Noé , Marta L. Gîrdea , Gregory Kucherov
RECOMB, Aug 2010, Lisbon, Portugal. pp.384-396, ⟨10.1007/978-3-642-12683-3_25⟩
Communication dans un congrès inria-00484642v1

Algorithms for bioinformatics

Hélène Touzet
Mihai Pop; Hélène Touzet. WABI, Sep 2015, Atlanta, United States. 9289, Springer Verlag, 2015, 15th International Workshop, WABI 2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings, ⟨10.1007/978-3-662-48221-6⟩
Proceedings/Recueil des communications hal-01228138v1
Image document

Evidence for the Existence of Elaborate Enzyme Complexes in the Paleoarchean Era

Bernd Reisinger , Josef Sperl , Alexandra Holinski , Veronika Schmid , Chitra Rajendran et al.
Journal of the American Chemical Society, 2014, pp.122-9. ⟨10.1021/ja4115677⟩
Article dans une revue hal-00924047v1

Palantir: a springboard for the analysis of secondary metabolite gene clusters in large-scale genome mining projects

Loïc Meunier , Pierre Tocquin , Luc Cornet , Damien Sirjacobs , Valérie Leclère et al.
Bioinformatics, 2020, 36 (15), pp.4345-4347. ⟨10.1093/bioinformatics/btaa517⟩
Article dans une revue hal-03081849v1

Iterative Spaced Seed Hashing: Closing the Gap Between Spaced Seed Hashing and k -mer Hashing

Enrico Petrucci , Laurent Noé , Cinzia Pizzi , Matteo Comin
Journal of Computational Biology, 2020, 27 (2), pp.223-233. ⟨10.1089/cmb.2019.0298⟩
Article dans une revue hal-02910076v1

Bioinformatics Tools for the Discovery of New Nonribosomal Peptides

Valérie Leclère , Tilmann Weber , Philippe Jacques , Maude Pupin
Bradley S. Evans. Nonribosomal Peptide and Polyketide Biosynthesis, 1401, Humana Press, pp.209-232, 2016, Methods in Molecular Biology, 978-1-4939-3373-0 978-1-4939-3375-4. ⟨10.1007/978-1-4939-3375-4_14⟩
Chapitre d'ouvrage hal-01398960v1

Perfect Hashing Structures for Parallel Similarity Searches

Tuan Tu Tran , Mathieu Giraud , Jean-Stéphane Varré
International Workshop on High Performance Computational Biology (HiCOMB 2015) / International Parallel and Distributed Processing Symposium (IPDPS 2015), 2015, Hyderabad, India. pp.332-341, ⟨10.1109/IPDPSW.2015.105⟩
Communication dans un congrès hal-01153893v1
Image document

Norine: a powerful resource for novel nonribosomal peptide discovery

Maude Pupin , Qassim Esmaeel , Areski Flissi , Yoann Dufresne , Philippe Jacques et al.
Synthetic and Systems Biotechnology, 2015, ⟨10.1016/j.synbio.2015.11.001⟩
Article dans une revue hal-01250614v1

Porechop_ABI: discovering unknown adapters in Oxford Nanopore Technology sequencing reads for downstream trimming

Quentin Bonenfant , Laurent Noé , Hélène Touzet
Bioinformatics Advances, 2023, ⟨10.1093/bioadv/vbac085⟩
Article dans une revue hal-03932719v1
Image document

On the number of elements to reorder when updating a suffix array

Martine Léonard , Laurent Mouchard , Mikaël Salson
Journal of Discrete Algorithms, 2012, 11, pp.87-99. ⟨10.1016/j.jda.2011.01.002⟩
Article dans une revue inria-00636066v1
Image document

RNA Locally Optimal Secondary Structures

Azadeh Saffarian , Mathieu Giraud , Antoine de Monte , Hélène Touzet
Journal of Computational Biology, 2012, 19 (10), pp.1120-1133. ⟨10.1089/cmb.2010.0178⟩
Article dans une revue hal-00756249v1

Subset seed extension to Protein BLAST

Anna Gambin , Slawomir Lasota , Michal Startek , Maciej Sykulski , Laurent Noé et al.
Bioinformatics 2011 - International Conference on Bioinformatics Models, Methods and Algorithms, Jan 2011, Rome, Italy. pp.149-158, ⟨10.5220/0003147601490158⟩
Communication dans un congrès inria-00609791v1

Standardized next-generation sequencing of immunoglobulin and T-cell receptor gene recombinations for MRD marker identification in acute lymphoblastic leukaemia; a EuroClonality-NGS validation study

Monika Brüggemann , Michaela Kotrova , Henrik Knecht , Jack Bartram , Myriam Boudjogrha et al.
Article dans une revue hal-02169053v1

High-Throughput Immunogenetics for Clinical and Research Applications in Immunohematology: Potential and Challenges.

Anton W Langerak , Monika Brüggemann , Frédéric Davi , Nikos Darzentas , Jacques J M van Dongen et al.
Journal of Immunology, 2017, pp.1602050. ⟨10.4049/jimmunol.1602050⟩
Article dans une revue hal-01516289v1
Image document

New algorithmic and bioinformatic approaches for the analysis of data from high throughput sequencing

Evguenia Kopylova
Bioinformatics [q-bio.QM]. Université des Sciences et Technologie de Lille - Lille I, 2013. English. ⟨NNT : ⟩
Thèse tel-00919185v2

SortMeRNA: a new software to filter total RNA for metatranscriptomic or RNA analysis

Evguenia Kopylova , Laurent Noé , Helene Touzet
JOBIM - Journées Ouvertes en Biologie, Informatique et Mathématiques - 2012, Jul 2012, Rennes, France
Communication dans un congrès hal-00763792v1

Computational and experimental evidence for the evolution of a (beta alpha)8-barrel protein from an ancestral quarter-barrel stabilised by disulfide bonds.

Markus Richter , Manal Bosnali , Linn Carstensen , Tobias Seitz , Helmut Durchschlag et al.
Journal of Molecular Biology, 2010, 398 (5), pp.763-73. ⟨10.1016/j.jmb.2010.03.057⟩
Article dans une revue hal-00755666v1

From Sequences to Graphs: Discrete Methods and Structures for Bioinformatics

Annie Chateau , Mikaël Salson
Ouvrages hal-03920813v1

String Processing and Information Retrieval

Thierry Lecroq , Hélène Touzet
Springer International Publishing, 12944, 2021, Lecture Notes in Computer Science, ⟨10.1007/978-3-030-86692-1⟩
Ouvrages hal-03368750v1
Image document

Indexing labeled sequences

Tatiana Rocher , Mathieu Giraud , Mikaël Salson
PeerJ Computer Science, 2018, 4, pp.1-14. ⟨10.7717/peerj-cs.148⟩
Article dans une revue hal-01743104v1

Faster exact distributions of pattern statistics through sequential elimination of states

Donald E. K. Martin , Laurent Noé
Annals of the Institute of Statistical Mathematics, 2017, 69 (1), pp.231--248. ⟨10.1007/s10463-015-0540-y⟩
Article dans une revue hal-01237045v1
Image document

Fast and scalable minimal perfect hashing for massive key sets

Antoine Limasset , Guillaume Rizk , Rayan Chikhi , Pierre Peterlongo
16th International Symposium on Experimental Algorithms, Jun 2017, London, United Kingdom. pp.1 - 11
Communication dans un congrès hal-01566246v1

Best hits of 11110110111: model-free selection and parameter-free sensitivity calculation of spaced seeds

Laurent Noé
Algorithms for Molecular Biology, 2017, 12 (1), ⟨10.1186/s13015-017-0092-1⟩
Article dans une revue hal-01467970v1
Image document

Indexer un ensemble de séquences ADN annotées

Tatiana Rocher , Mathieu Giraud , Mikael Salson
JOBIM, Jun 2016, Lyon, France
Communication dans un congrès hal-01576319v1
Image document

Efficient approximations of RNA kinetics landscape using non-redundant sampling

Juraj Michálik , Hélène Touzet , Yann Ponty
ISMB/ECCB - 25th Annual international conference on Intelligent Systems for Molecular Biology/16th European Conference on Computational Biology - 2017, Jul 2017, Prague, Czech Republic. pp.i283 - i292, ⟨10.1093/bioinformatics/btx269⟩
Communication dans un congrès hal-01500115v1
Image document

Practical dynamic de Bruijn graphs

Alan Kuhnle , Victoria G. Crawford , Christina Boucher , Rayan Chikhi , Travis Gagie et al.
Article dans une revue hal-01935559v1
Image document

Algorithmes pour la reconstruction de séquences de marqueurs conservés dans des données de métagénomique

Pierre Pericard
Bio-informatique [q-bio.QM]. Université de Lille, 2017. Français. ⟨NNT : 2017LIL10084⟩
Thèse tel-01738687v2
Image document

Smiles2Monomers: a link between chemical and biological structures for polymers

Yoann Dufresne , Laurent Noé , Valérie Leclère , Maude Pupin
Journal of Cheminformatics, 2015, 7, ⟨10.1186/s13321-015-0111-5⟩
Article dans une revue hal-01250619v1