On the readability of overlap digraphs
Rayan Chikhi
,
Paul Medvedev
,
Martin Milanič
,
Sofya Raskhodnikova
Article dans une revue
hal-01729749v1
Actions
Partager
Gmail
Facebook
Twitter
LinkedIn
More
Algorithmique pour la recherche de motifs approchée et application à la recherche de cibles de microARN
Christophe Vroland
Bio-informatique [q-bio.QM]. Université Lille 1 Sciences et technologies, 2016. Français.
⟨NNT : ⟩
Thèse
tel-01576433v1
Actions
Partager
Gmail
Facebook
Twitter
LinkedIn
More
Giraffe genome sequence reveals clues to its unique morphology and physiology
Morris Agaba
,
Edson Ishengoma
,
Webb Colby Miller
,
Barbara C. Mcgrath
,
Chelsea N. Hudson
et al.
Article dans une revue
hal-01395703v1
Actions
Partager
Gmail
Facebook
Twitter
LinkedIn
More
Burkholderia genome mining for nonribosomal peptide synthetases reveals a great potential for novel siderophores and lipopeptides synthesis
Qassim Esmaeel
,
Maude Pupin
,
Nam Phuong Kieu
,
Gabrielle Chataigné
,
Max Béchet
et al.
Article dans une revue
hal-01398944v1
Actions
Partager
Gmail
Facebook
Twitter
LinkedIn
More
Compter les globules blancs, analyser les partitions
Mathieu Giraud
Informatique [cs]. Université de Lille 1 – Sciences et Technologies, 2016
HDR
tel-01577763v1
Actions
Partager
Gmail
Facebook
Twitter
LinkedIn
More
On the Levenshtein Automaton and the Size of the Neighborhood of a Word
Hélène Touzet
LATA 2016 - 10th International Conference on Language and Automata Theory and Applications , Mar 2016, Prague, Czech Republic. pp.207-218,
⟨10.1007/978-3-319-30000-9_16⟩
Communication dans un congrès
hal-01360482v1
Actions
Partager
Gmail
Facebook
Twitter
LinkedIn
More
A time- and cost-effective strategy to sequence mammalian Y Chromosomes: an application to the de novo assembly of gorilla Y
Marta Tomaszkiewicz
,
Samarth Rangavittal
,
Monika Cechova
,
Rebeca Campos Sanchez
,
Howard William Fescemyer
et al.
Article dans une revue
hal-01395702v1
Actions
Partager
Gmail
Facebook
Twitter
LinkedIn
More
Assembly scaffolding with PE-contaminated mate-pair libraries
Kristoffer Sahlin
,
Rayan Chikhi
,
Lars Arvestad
Article dans une revue
hal-01396904v1
Actions
Partager
Gmail
Facebook
Twitter
LinkedIn
More
Bioinformatics Tools for the Discovery of New Nonribosomal Peptides
Valérie Leclère
,
Tilmann Weber
,
Philippe Jacques
,
Maude Pupin
Bradley S. Evans.
Nonribosomal Peptide and Polyketide Biosynthesis , 1401, Humana Press, pp.209-232, 2016, Methods in Molecular Biology, 978-1-4939-3373-0 978-1-4939-3375-4.
⟨10.1007/978-1-4939-3375-4_14⟩
Chapitre d'ouvrage
hal-01398960v1
Actions
Partager
Gmail
Facebook
Twitter
LinkedIn
More
Assisted transcriptome reconstruction and splicing orthology
Samuel Blanquart
,
Jean-Stéphane Varré
,
Paul Guertin
,
Amandine Perrin
,
Anne Bergeron
et al.
BMC Genomics , 2016, Proceedings of the 14th Annual Research in Computational Molecular Biology (RECOMB) Comparative Genomics Satellite Workshop: genomics, 17 (Suppl 10), pp.786.
⟨10.1186/s12864-016-3103-6⟩
Article dans une revue
hal-01396410v1
Actions
Partager
Gmail
Facebook
Twitter
LinkedIn
More
Multi-loci diagnosis of acute lymphoblastic leukaemia with high-throughput sequencing and bioinformatics analysis
Yann Ferret
,
Aurélie Caillault
,
Shéhérazade Sebda
,
Marc Duez
,
Nathalie Grardel
et al.
Article dans une revue
hal-01279160v1
Actions
Partager
Gmail
Facebook
Twitter
LinkedIn
More
Nonribosomal peptide synthetase with a unique iterative-alternative-optional mechanism catalyzes amonabactin synthesis in Aeromonas
Qassim Esmaeel
,
Mickael Chevalier
,
Gabrielle Chataigne
,
Rathinasamy Subashkumar
,
Philippe Jacques
et al.
Article dans une revue
hal-01601408v1
Actions
Partager
Gmail
Facebook
Twitter
LinkedIn
More
Traitement des données - introduction
Iovka Boneva
,
Héléne Touzet
Les Big Data à découvert , 2016
Chapitre d'ouvrage
hal-01574692v1
Actions
Partager
Gmail
Facebook
Twitter
LinkedIn
More
A dataset of sequences with manually curated V(D)J designations
Mikael Salson
,
Aurélie Caillault
,
Marc Duez
,
Yann Ferret
,
Alice Fievet
et al.
2016
Autre publication scientifique
hal-01331556v1
Actions
Partager
Gmail
Facebook
Twitter
LinkedIn
More
Approximate search of short patterns with high error rates using the 01⁎0 lossless seeds
Christophe Vroland
,
Mikael Salson
,
Sébastien Bini
,
Hélène Touzet
Article dans une revue
hal-01360485v1
Actions
Partager
Gmail
Facebook
Twitter
LinkedIn
More
Smiles2Monomers: a link between chemical and biological structures for polymers
Yoann Dufresne
,
Laurent Noé
,
Valérie Leclère
,
Maude Pupin
Article dans une revue
hal-01250619v1
Actions
Partager
Gmail
Facebook
Twitter
LinkedIn
More
Norine: a powerful resource for novel nonribosomal peptide discovery
Maude Pupin
,
Qassim Esmaeel
,
Areski Flissi
,
Yoann Dufresne
,
Philippe Jacques
et al.
Article dans une revue
hal-01250614v1
Actions
Partager
Gmail
Facebook
Twitter
LinkedIn
More
Algorithms for bioinformatics
Hélène Touzet
Mihai Pop; Hélène Touzet.
WABI , Sep 2015, Atlanta, United States. 9289,
Springer Verlag , 2015, 15th International Workshop, WABI 2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings,
⟨10.1007/978-3-662-48221-6⟩
Proceedings/Recueil des communications
hal-01228138v1
Actions
Partager
Gmail
Facebook
Twitter
LinkedIn
More
The predictive strength of next-generation sequencing MRD detection for relapse compared with current methods in childhood ALL.
Michaela Kotrova
,
Katerina Muzikova
,
Ester Mejstrikova
,
Michaela Novakova
,
Violeta Bakardjieva-Mihaylova
et al.
Article dans une revue
hal-01241663v1
Actions
Partager
Gmail
Facebook
Twitter
LinkedIn
More
Finding and analysing microRNAs in plant genomes with miRkwood
Isabelle Guigon
,
Sylvain Legrand
,
Jean-Frédéric Berthelot
,
Mohcen Benmounah
,
Helene Touzet
et al.
JOBIM 2015 , Jul 2015, Clermont-Ferrand, France
Communication dans un congrès
hal-01247604v1
Actions
Partager
Gmail
Facebook
Twitter
LinkedIn
More
Modeling alternate RNA structures in genomic sequences.
Azadeh Saffarian
,
Mathieu Giraud
,
Hélène Touzet
Journal of Computational Biology , 2015, 22 (3), pp.190-204
Article dans une revue
hal-01228130v1
Actions
Partager
Gmail
Facebook
Twitter
LinkedIn
More
Genome scaffolding with PE-contaminated mate-pair libraries
Kristoffer Sahlin
,
Rayan Chikhi
,
Lars Arvestad.
Communication dans un congrès
hal-01236176v1
Actions
Partager
Gmail
Facebook
Twitter
LinkedIn
More
Perfect Hashing Structures for Parallel Similarity Searches
Tuan Tu Tran
,
Mathieu Giraud
,
Jean-Stéphane Varré
International Workshop on High Performance Computational Biology (HiCOMB 2015) / International Parallel and Distributed Processing Symposium (IPDPS 2015) , 2015, Hyderabad, India. pp.332-341,
⟨10.1109/IPDPSW.2015.105⟩
Communication dans un congrès
hal-01153893v1
Actions
Partager
Gmail
Facebook
Twitter
LinkedIn
More
Norine, the knowledgebase dedicated to non-ribosomal peptides, is now open to crowdsourcing
Areski Flissi
,
Yoann Dufresne
,
Juraj Michalik
,
Laurie Tonon
,
Stéphane Janot
et al.
Article dans une revue
hal-01235996v1
Actions
Partager
Gmail
Facebook
Twitter
LinkedIn
More
Deciphering metatranscriptomic data
Evguenia Kopylova
,
Laurent Noé
,
Corinne da Silva
,
Jean-Frédéric Berthelot
,
Adriana A. Alberti
et al.
Chapitre d'ouvrage
hal-01104015v1
Actions
Partager
Gmail
Facebook
Twitter
LinkedIn
More
ProCARs: Progressive Reconstruction of Ancestral Gene Orders
Amandine Perrin
,
Jean-Stéphane Varré
,
Samuel Blanquart
,
Aïda Ouangraoua
Article dans une revue
hal-01217311v1
Actions
Partager
Gmail
Facebook
Twitter
LinkedIn
More
A Coverage Criterion for Spaced Seeds and Its Applications to Support Vector Machine String Kernels and $k$-Mer Distances
Laurent Noé
,
Donald E. K. Martin
Article dans une revue
hal-01083204v1
Actions
Partager
Gmail
Facebook
Twitter
LinkedIn
More
ProCARs: Progressive Reconstruction of Ancestral Gene Orders
Amandine Perrin
,
Jean-Stéphane Varré
,
Samuel Blanquart
,
Aïda Ouangraoua
ISCB-Latin America , Oct 2014, Belo Horizonte, Brazil
Communication dans un congrès
hal-01083841v1
Actions
Partager
Gmail
Facebook
Twitter
LinkedIn
More
Lossless seeds for searching short patterns with high error rates
Christophe Vroland
,
Mikaël Salson
,
Hélène Touzet
International Workshop On Combinatorial Algorithms , Oct 2014, Duluth, United States
Communication dans un congrès
hal-01079840v1
Actions
Partager
Gmail
Facebook
Twitter
LinkedIn
More
Searching for alternate RNA structures in genomic sequences
Azadeh Saffarian
,
Mathieu Giraud
,
Hélène Touzet
Communication dans un congrès
hal-01084319v1
Actions
Partager
Gmail
Facebook
Twitter
LinkedIn
More