Monomer structure fingerprints: an extension of the monomer composition version for peptide databases
Ammar Abdo
,
Eissa Ghaleb
,
Naser Alajmi
,
Maude Pupin
Article dans une revue
hal-03081813v1
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Palantir: a springboard for the analysis of secondary metabolite gene clusters in large-scale genome mining projects
Loïc Meunier
,
Pierre Tocquin
,
Luc Cornet
,
Damien Sirjacobs
,
Valérie Leclère
et al.
Article dans une revue
hal-03081849v1
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REINDEER: efficient indexing of k-mer presence and abundance in sequencing datasets
Camille Marchet
,
Zamin Iqbal
,
Daniel Gautheret
,
Mikaël Salson
,
Rayan Chikhi
et al.
Article dans une revue
hal-03413006v1
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ELECTOR : evaluator for long reads correction methods
Camille Marchet
,
Pierre Morisse
,
Lolita Lecompte
,
Arnaud Lefebvre
,
Thierry Lecroq
et al.
Article dans une revue
hal-02371117v1
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Iterative Spaced Seed Hashing: Closing the Gap Between Spaced Seed Hashing and k -mer Hashing
Enrico Petrucci
,
Laurent Noé
,
Cinzia Pizzi
,
Matteo Comin
Article dans une revue
hal-02910076v1
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Use of whole-genome sequencing in the molecular investigation of care-associated HCoV-OC43 infections in a hematopoietic stem cell transplant unit
Delphine Beury
,
Léa Fléchon
,
Florence Maurier
,
Ségolène Caboche
,
Jean-Stéphane Varré
et al.
Article dans une revue
hal-02403094v1
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Novel components at the periphery of long read genome assembly tools
Pierre Marijon
Computer Science [cs]. University of Lille, 2019. English.
⟨NNT : ⟩
Thèse
tel-02441360v1
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miRkwood: a tool for the reliable identification of microRNAs in plant genomes
Isabelle Guigon
,
Sylvain Legrand
,
Jean-Frédéric Berthelot
,
Sébastien Bini
,
Delphine Lanselle
et al.
Article dans une revue
hal-02265367v1
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rBAN: retro-biosynthetic analysis of nonribosomal peptides
Emma Ricart
,
Valérie Leclère
,
Areski Flissi
,
Markus Mueller
,
Maude Pupin
et al.
Article dans une revue
hal-02167433v1
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Kendrick Mass Defect Approach Combined to NORINE Database for Molecular Formula Assignment of Nonribosomal Peptides
Mickael Chevalier
,
Emma Ricart
,
Emeline Hanozin
,
Maude Pupin
,
Philippe Jacques
et al.
Article dans une revue
hal-02417587v1
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Predicting isoform transcripts: What does the comparison of known transcripts in human, mouse and dog tell us?
Nicolas Guillaudeux
,
Catherine Belleannée
,
Samuel Blanquart
,
Jean-Stéphane Varré
Poster de conférence
hal-02267357v1
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Comparative assessment of long-read error correction software applied to Nanopore RNA-sequencing data
Leandro Lima
,
Camille Marchet
,
Ségolène Caboche
,
Corinne da Silva
,
Benjamin Istace
et al.
Article dans une revue
hal-02394395v1
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Iterative Spaced Seed Hashing: Closing the Gap Between Spaced Seed Hashing and k-mer Hashing
Enrico Petrucci
,
Laurent Noé
,
Cinzia Pizzi
,
Matteo Comin
15th International Symposium on Bioinformatics Research and Applications (ISBRA) , Jun 2019, Barcelona, Spain. pp.208-219,
⟨10.1007/978-3-030-20242-2_18⟩
Communication dans un congrès
hal-02146404v1
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CONSENT: Scalable self-correction of long reads with multiple sequence alignment
Pierre Morisse
,
Camille Marchet
,
Antoine Limasset
,
Thierry Lecroq
,
Arnaud Lefebvre
et al.
Recomb-Seq 2019 - 9th RECOMB Satellite Workshop on Massively Parallel Sequencing , May 2019, Washinton, United States. pp.1-9,
⟨10.1101/546630⟩
Communication dans un congrès
hal-02435116v1
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Indexing De Bruijn graphs with minimizers
Camille Marchet
,
Maël Kerbiriou
,
Antoine Limasset
Recomb-Seq 2019 - 9th RECOMB Satellite Workshop on Massively Parallel Sequencing , May 2019, Whashinton, United States. pp.1-16,
⟨10.1101/546309⟩
Communication dans un congrès
hal-02435086v1
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A complete protocol for whole-genome sequencing of virus from clinical samples: Application to coronavirus OC43
Florence Maurier
,
Delphine Beury
,
Léa Fléchon
,
Jean-Stéphane Varré
,
Hélène Touzet
et al.
Article dans une revue
hal-02167880v1
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Non-redundant sampling in RNA Bioinformatics
Juraj Michalik
Thèse
tel-02124550v1
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Graph analysis of fragmented long-read bacterial genome assemblies
Pierre Marijon
,
Rayan Chikhi
,
Jean-Stéphane Varré
Article dans une revue
hal-02167175v1
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Toward perfect reads: self-correction of short reads via mapping on de Bruijn graphs
Antoine Limasset
,
Jean-François Flot
,
Pierre Peterlongo
Article dans une revue
hal-02407243v1
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Standardized next-generation sequencing of immunoglobulin and T-cell receptor gene recombinations for MRD marker identification in acute lymphoblastic leukaemia; a EuroClonality-NGS validation study
Monika Brüggemann
,
Michaela Kotrova
,
Henrik Knecht
,
Jack Bartram
,
Myriam Boudjogrha
et al.
Article dans une revue
hal-02169053v1
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Norine: update of the nonribosomal peptide resource
Areski Flissi
,
Emma Ricart
,
Clémentine Campart
,
Mickael Chevalier
,
Yoann Dufresne
et al.
Article dans une revue
hal-02376009v1
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Complete Sequence, Multichromosomal Architecture and Transcriptome Analysis of the Solanum tuberosum Mitochondrial Genome
Jean-Stéphane Varré
,
Nunzio d'Agostino
,
Pascal Touzet
,
Sophie Gallina
,
Rachele Tamburino
et al.
Article dans une revue
hal-02298474v1
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DiNAMO: highly sensitive DNA motif discovery in high-throughput sequencing data
Chadi Saad
,
Laurent Noé
,
Hugues Richard
,
Julie Leclerc
,
Marie-Pierre Buisine
et al.
Article dans une revue
hal-01881466v1
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Dualities in Tree Representations
Rayan Chikhi
,
Alexander Schönhuth
2018
Pré-publication, Document de travail
hal-01935566v1
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Bipartite Graphs of Small Readability
Rayan Chikhi
,
Vladan Jovičić
,
Stefan Kratsch
,
Paul Medvedev
,
Martin Milanic
et al.
COCOON 2018 - The 24th International Computing and Combinatorics Conference , Jul 2018, Qingdao, China
Communication dans un congrès
hal-01935562v1
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Bioinformatics tools for the discovery of new lipopeptides with biocontrol applications
Maude Pupin
,
Areski Flissi
,
Philippe Jacques
,
Valérie Leclère
Article dans une revue
hal-01937890v1
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Practical dynamic de Bruijn graphs
Alan Kuhnle
,
Victoria G. Crawford
,
Christina Boucher
,
Rayan Chikhi
,
Travis Gagie
et al.
Article dans une revue
hal-01935559v1
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Using Minimum Path Cover to Boost Dynamic Programming on DAGs: Co-Linear Chaining Extended
Anna Kuosmanen
,
Topi Paavilainen
,
Travis Gagie
,
Rayan Chikhi
,
Alexandru Ioan Tomescu
et al.
RECOMB 2018 - 22nd Annual International Conference on Research in Computational Molecular Biology , Apr 2018, Paris, France
Communication dans un congrès
hal-01935568v1
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Compression et indexation de séquences annotées
Tatiana Rocher
Bio-informatique [q-bio.QM]. Université de Lille, 2018. Français.
⟨NNT : ⟩
Thèse
tel-01758361v1
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L codent, L créent: créations numériques artistiques pour démystifier l'informatique... au féminin! (descriptif d’atelier)
Philippe Marquet
,
Maude Pupin
,
Yann Secq
Didapro 7 – DidaSTIC. De 0 à 1 ou l’heure de l’informatique à l’école , Feb 2018, Lausanne, Suisse. pp.1-2
Communication dans un congrès
hal-01753402v1
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