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A new fingerprint to predict nonribosomal peptides activity.
Ammar Hasan Abdo
,
Ségolène Caboche
,
Valérie Leclère
,
Philippe Jacques
,
Maude Pupin
Article dans une revue
hal-00750002v1
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Turbo prediction: a new approach for bioactivity prediction
Ammar Abdo
,
Maude Pupin
Article dans une revue
hal-03833232v1
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Prediction of New Bioactive Molecules using a Bayesian Belief Network
Ammar Abdo
,
Valérie Leclère
,
Philippe Jacques
,
Naomie Salim
,
Maude Pupin
Article dans une revue
hal-01090611v1
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Monomer structure fingerprints: an extension of the monomer composition version for peptide databases
Ammar Abdo
,
Eissa Ghaleb
,
Naser Alajmi
,
Maude Pupin
Article dans une revue
hal-03081813v1
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Giraffe genome sequence reveals clues to its unique morphology and physiology
Morris Agaba
,
Edson Ishengoma
,
Webb Colby Miller
,
Barbara C. Mcgrath
,
Chelsea N. Hudson
,
et al.
Article dans une revue
hal-01395703v1
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Toward Optimal Fingerprint Indexing for Large Scale Genomics
Clément Agret
,
Bastien Cazaux
,
Antoine Limasset
WABI 2022 - 22nd International Workshop on Algorithms in Bioinformatics, Sep 2022, Postdam, Germany. pp.25:1-25:15, ⟨10.4230/LIPIcs.WABI.2022.25⟩
Communication dans un congrès
hal-04121819v1
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RedOak: a reference-free and alignment-free structure for indexing a collection of similar genomes
Clément Agret
,
Annie Chateau
,
Gaetan Droc
,
Gautier Sarah
,
Manuel Ruiz
,
et al.
Article dans une revue
lirmm-03920648v1
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NIQKI
Clément Agret
,
Bastien Cazaux
,
Antoine Limasset
Logiciel
lirmm-04121986v1
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SARS-CoV-2 Through the Lens of Computational Biology: How bioinformatics is playing a key role in the study of the virus and its origins
Samuel Alizon
,
Frédéric Cazals
,
Stéphane Guindon
,
Claire Lemaitre
,
Tristan Mary-Huard
,
et al.
[Research Report] CNRS. 2021, pp.1-35
Rapport
hal-03170023v1
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BRASERO: A resource for benchmarking RNA secondary structure comparison algorithms
Julien Allali
,
Cédric Saule
,
Cedric Chauve
,
Yves d'Aubenton-Carafa
,
Alain Denise
,
et al.
Article dans une revue
hal-00647725v1
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Proteomic characterisation of leech microglia extracellular vesicles (EVs): comparison between differential ultracentrifugation and Optiprep™ density gradient isolation
T Arab
,
A Raffo-Romero
,
C van Camp
,
Q Lemaire
,
F Le Marrec-Croq
,
et al.
Article dans une revue
inserm-02941660v1
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Genetic basis for virulence differences of various Cryptosporidium parvum carcinogenic isolates
Christophe Audebert
,
Franck Bonardi
,
Ségolène Caboche
,
Karine Guyot
,
Hélène Touzet
,
et al.
Article dans une revue
inserm-02873228v1
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DE-kupl: exhaustive capture of biological variation in RNA-seq data through k-mer decomposition
Jérôme Audoux
,
Nicolas Philippe
,
Rayan Chikhi
,
Mikael Salson
,
Mélina Gallopin
,
et al.
Article dans une revue
hal-01728770v1
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SimBA: A methodology and tools for evaluating the performance of RNA-Seq bioinformatic pipelines
Jérôme Audoux
,
Mikaël Salson
,
Christophe Grosset
,
Sacha Beaumeunier
,
Jean-Marc Holder
,
et al.
Article dans une revue
inserm-02437931v1
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Tn-phyto: essential genomes of nine bacterial phytopathogens
Julie Baltenneck
,
Ben Moussa
,
Loïc Couderc
,
Areski Flissi
,
Jacques Pédron
,
et al.
4. International Ewinia workshop (IEW), Jul 2022, Assise, Italy
Poster de conférence
hal-03721522v1
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Structure, biosynthesis, and properties of kurstakins, nonribosomal lipopeptides from Bacillus spp.
Max Béchet
,
Thibault Caradec
,
Walaa Hussein
,
Ahmed Abderrahmani
,
Marlène Chollet
,
et al.
Article dans une revue
hal-00749819v1
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biomanycores.org: a repository of interoperable open-source code for many-core bioinformatics
Jean-Frédéric Berthelot
,
Charles Deltel
,
Mathieu Giraud
,
Stéphane Janot
,
Laetitia Jourdan
,
et al.
JOBIM 2011, Jul 2011, Paris, France
Communication dans un congrès
hal-00637847v1
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Use of whole-genome sequencing in the molecular investigation of care-associated HCoV-OC43 infections in a hematopoietic stem cell transplant unit
Delphine Beury
,
Léa Fléchon
,
Florence Maurier
,
Ségolène Caboche
,
Jean-Stéphane Varré
,
et al.
Article dans une revue
hal-02403094v1
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Mitochondrial genes support a common origin of rodent malaria parasites and Plasmodium falciparum's relatives infecting great apes
Samuel Blanquart
,
Olivier Gascuel
Article dans une revue
hal-00784426v1
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Assisted transcriptome reconstruction and splicing orthology
Samuel Blanquart
,
Jean-Stéphane Varré
,
Paul Guertin
,
Amandine Perrin
,
Anne Bergeron
,
et al.
BMC Genomics, 2016, Proceedings of the 14th Annual Research in Computational Molecular Biology (RECOMB) Comparative Genomics Satellite Workshop: genomics, 17 (Suppl 10), pp.786. ⟨10.1186/s12864-016-3103-6⟩
Article dans une revue
hal-01396410v1
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Porechop_ABI: discovering unknown adapters in Oxford Nanopore Technology sequencing reads for downstream trimming
Quentin Bonenfant
,
Laurent Noé
,
Hélène Touzet
Article dans une revue
hal-03932719v1
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Traitement des données - introduction
Iovka Boneva
,
Héléne Touzet
Les Big Data à découvert, 2016
Chapitre d'ouvrage
hal-01574692v1
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Frugal alignment-free identification of FLT3-internal tandem duplications with FiLT3r
Augustin Boudry
,
Sasha Darmon
,
Nicolas Duployez
,
Martin Figeac
,
Sandrine Geffroy
,
et al.
Article dans une revue
hal-03920854v1
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Standardized next-generation sequencing of immunoglobulin and T-cell receptor gene recombinations for MRD marker identification in acute lymphoblastic leukaemia; a EuroClonality-NGS validation study
Monika Brüggemann
,
Michaela Kotrova
,
Henrik Knecht
,
Jack Bartram
,
Myriam Boudjogrha
,
et al.
Article dans une revue
hal-02169053v1
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Mise en place d'une plate-forme logicielle pour l'analyse des peptides non-ribosomiaux
Ségolène Caboche
Bio-informatique [q-bio.QM]. Université des Sciences et Technologie de Lille - Lille I, 2009. Français. ⟨NNT : ⟩
Thèse
tel-00823447v1
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Diversity of monomers in nonribosomal peptides: towards the prediction of origin and biological activity.
Ségolène Caboche
,
Valérie Leclère
,
Maude Pupin
,
Gregory Kucherov
,
Philippe Jacques
Article dans une revue
hal-00641488v1
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Structural pattern matching of nonribosomal peptides.
Ségolène Caboche
,
Maude Pupin
,
Valérie Leclère
,
Philippe Jacques
,
Gregory Kucherov
Article dans une revue
hal-00641486v1
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NORINE: a database of nonribosomal peptides.
Ségolène Caboche
,
Maude Pupin
,
Valérie Leclère
,
Arnaud Fontaine
,
Philippe Jacques
,
et al.
Article dans une revue
inria-00281012v1
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Prediction of Monomer Isomery in Florine: A Workflow Dedicated to Nonribosomal Peptide Discovery
Thibault Caradec
,
Maude Pupin
,
Aurélien Vanvlassenbroeck
,
Marie-Dominique Devignes
,
Malika Smaïl-Tabbone
,
et al.
Article dans une revue
hal-01090619v1
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From Sequences to Graphs: Discrete Methods and Structures for Bioinformatics
Annie Chateau
,
Mikaël Salson
Ouvrages
hal-03920813v1
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