String Processing and Information Retrieval
Thierry Lecroq
,
Hélène Touzet
Ouvrages
hal-03368750v1
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Practical dynamic de Bruijn graphs
Alan Kuhnle
,
Victoria G. Crawford
,
Christina Boucher
,
Rayan Chikhi
,
Travis Gagie
et al.
Article dans une revue
hal-01935559v1
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Finding and analysing microRNAs in plant genomes with miRkwood
Isabelle Guigon
,
Sylvain Legrand
,
Jean-Frédéric Berthelot
,
Mohcen Benmounah
,
Helene Touzet
et al.
JOBIM 2015 , Jul 2015, Clermont-Ferrand, France
Communication dans un congrès
hal-01247604v1
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Smiles2Monomers: a link between chemical and biological structures for polymers
Yoann Dufresne
,
Laurent Noé
,
Valérie Leclère
,
Maude Pupin
Article dans une revue
hal-01250619v1
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Chromosome-level genome assembly reveals homologous chromosomes and recombination in asexual rotifer Adineta vaga
Paul Simion
,
Jitendra Narayan
,
Antoine Houtain
,
Alessandro Derzelle
,
Lyam Baudry
et al.
Article dans une revue
hal-03406292v1
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Debugging long-read genome and metagenome assemblies using string graph analysis
Pierre Marijon
,
Jean-Stéphane Varré
,
Rayan Chikhi
JOBIM 2017- Journées Ouvertes en Biologie, Informatique et Mathématiques , Jul 2017, Lille, France.
Poster de conférence
hal-01574824v1
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Matrices score-position, algorithmes et propriétés
Aude Liefooghe
Bio-informatique [q-bio.QM]. Université des Sciences et Technologie de Lille - Lille I, 2008. Français.
⟨NNT : ⟩
Thèse
tel-00832725v1
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SortMeRNA: a new software to filter total RNA for metatranscriptomic or RNA analysis
Evguenia Kopylova
,
Laurent Noé
,
Helene Touzet
JOBIM - Journées Ouvertes en Biologie, Informatique et Mathématiques - 2012 , Jul 2012, Rennes, France
Communication dans un congrès
hal-00763792v1
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Algorithmes pour la comparaison de génomes et la recherche de signaux cis-régulateurs
Jean-Stéphane Varré
Bio-informatique [q-bio.QM]. Université des Sciences et Technologie de Lille - Lille I, 2008
HDR
tel-00832685v1
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New algorithmic and bioinformatic approaches for the analysis of data from high throughput sequencing
Evguenia Kopylova
Bioinformatics [q-bio.QM]. Université des Sciences et Technologie de Lille - Lille I, 2013. English.
⟨NNT : ⟩
Thèse
tel-00919185v2
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Computational and experimental evidence for the evolution of a (beta alpha)8-barrel protein from an ancestral quarter-barrel stabilised by disulfide bonds.
Markus Richter
,
Manal Bosnali
,
Linn Carstensen
,
Tobias Seitz
,
Helmut Durchschlag
et al.
Article dans une revue
hal-00755666v1
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On the number of elements to reorder when updating a suffix array
Martine Léonard
,
Laurent Mouchard
,
Mikaël Salson
Article dans une revue
inria-00636066v1
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RNA Locally Optimal Secondary Structures
Azadeh Saffarian
,
Mathieu Giraud
,
Antoine de Monte
,
Hélène Touzet
Article dans une revue
hal-00756249v1
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Sneak peek at the -tig sequences: useful sequences built from nucleic acid data
Camille Marchet
2022
Pré-publication, Document de travail
hal-03768446v2
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Norine: update of the nonribosomal peptide resource
Areski Flissi
,
Emma Ricart
,
Clémentine Campart
,
Mickael Chevalier
,
Yoann Dufresne
et al.
Article dans une revue
hal-02376009v1
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Predicting isoform transcripts: What does the comparison of known transcripts in human, mouse and dog tell us?
Nicolas Guillaudeux
,
Catherine Belleannée
,
Samuel Blanquart
,
Jean-Stéphane Varré
Poster de conférence
hal-02267357v1
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Complete Sequence, Multichromosomal Architecture and Transcriptome Analysis of the Solanum tuberosum Mitochondrial Genome
Jean-Stéphane Varré
,
Nunzio d'Agostino
,
Pascal Touzet
,
Sophie Gallina
,
Rachele Tamburino
et al.
Article dans une revue
hal-02298474v1
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Seed design framework for mapping SOLiD reads
Laurent Noé
,
Marta L. Gîrdea
,
Gregory Kucherov
Communication dans un congrès
inria-00484642v1
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Palantir: a springboard for the analysis of secondary metabolite gene clusters in large-scale genome mining projects
Loïc Meunier
,
Pierre Tocquin
,
Luc Cornet
,
Damien Sirjacobs
,
Valérie Leclère
et al.
Article dans une revue
hal-03081849v1
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Iterative Spaced Seed Hashing: Closing the Gap Between Spaced Seed Hashing and k -mer Hashing
Enrico Petrucci
,
Laurent Noé
,
Cinzia Pizzi
,
Matteo Comin
Article dans une revue
hal-02910076v1
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Norine: a powerful resource for novel nonribosomal peptide discovery
Maude Pupin
,
Qassim Esmaeel
,
Areski Flissi
,
Yoann Dufresne
,
Philippe Jacques
et al.
Article dans une revue
hal-01250614v1
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Porechop_ABI: discovering unknown adapters in Oxford Nanopore Technology sequencing reads for downstream trimming
Quentin Bonenfant
,
Laurent Noé
,
Hélène Touzet
Article dans une revue
hal-03932719v1
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Bipartite Graphs of Small Readability
Rayan Chikhi
,
Vladan Jovičić
,
Stefan Kratsch
,
Paul Medvedev
,
Martin Milanic
et al.
COCOON 2018 - The 24th International Computing and Combinatorics Conference , Jul 2018, Qingdao, China
Communication dans un congrès
hal-01935562v1
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Bioinformatics Tools for the Discovery of New Nonribosomal Peptides
Valérie Leclère
,
Tilmann Weber
,
Philippe Jacques
,
Maude Pupin
Bradley S. Evans.
Nonribosomal Peptide and Polyketide Biosynthesis , 1401, Humana Press, pp.209-232, 2016, Methods in Molecular Biology, 978-1-4939-3373-0 978-1-4939-3375-4.
⟨10.1007/978-1-4939-3375-4_14⟩
Chapitre d'ouvrage
hal-01398960v1
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Perfect Hashing Structures for Parallel Similarity Searches
Tuan Tu Tran
,
Mathieu Giraud
,
Jean-Stéphane Varré
International Workshop on High Performance Computational Biology (HiCOMB 2015) / International Parallel and Distributed Processing Symposium (IPDPS 2015) , 2015, Hyderabad, India. pp.332-341,
⟨10.1109/IPDPSW.2015.105⟩
Communication dans un congrès
hal-01153893v1
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Algorithms for bioinformatics
Hélène Touzet
Mihai Pop; Hélène Touzet.
WABI , Sep 2015, Atlanta, United States. 9289,
Springer Verlag , 2015, 15th International Workshop, WABI 2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings,
⟨10.1007/978-3-662-48221-6⟩
Proceedings/Recueil des communications
hal-01228138v1
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Genome scaffolding with PE-contaminated mate-pair libraries
Kristoffer Sahlin
,
Rayan Chikhi
,
Lars Arvestad.
Communication dans un congrès
hal-01236176v1
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Evidence for the Existence of Elaborate Enzyme Complexes in the Paleoarchean Era
Bernd Reisinger
,
Josef Sperl
,
Alexandra Holinski
,
Veronika Schmid
,
Chitra Rajendran
et al.
Article dans une revue
hal-00924047v1
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Tandem Halving Problems by DCJ
Antoine Thomas
,
Aïda Ouangraoua
,
Jean-Stéphane Varré
Communication dans un congrès
hal-00749019v1
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SortMeRNA: Fast and accurate filtering of ribosomal RNAs in metatranscriptomic data.
Evguenia Kopylova
,
Laurent Noé
,
Héléne Touzet
Article dans une revue
hal-00748990v1
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