Palantir: a springboard for the analysis of secondary metabolite gene clusters in large-scale genome mining projects - Archive ouverte HAL Accéder directement au contenu
Article Dans Une Revue Bioinformatics Année : 2020

Palantir: a springboard for the analysis of secondary metabolite gene clusters in large-scale genome mining projects

(1, 2, 3) , (1) , (4) , (1) , (5, 2) , (6) , (2, 3) , (7, 1)
1
2
3
4
5
6
7

Résumé

To support small and large-scale genome mining projects, we present Post-processing Analysis tooLbox for ANTIsmash Reports (Palantir), a dedicated software suite for handling and refining secondary metabolite biosynthetic gene cluster (BGC) data annotated with the popular antiSMASH pipeline. Palantir provides new functionalities building on NRPS/PKS predictions from antiSMASH, such as improved BGC annotation, module delineation and easy access to sub-sequences at different levels (cluster, gene, module and domain). Moreover, it can parse user-provided antiSMASH reports and reformat them for direct use or storage in a relational database.

Dates et versions

hal-03081849 , version 1 (18-12-2020)

Identifiants

Citer

Loïc Meunier, Pierre Tocquin, Luc Cornet, Damien Sirjacobs, Valérie Leclère, et al.. Palantir: a springboard for the analysis of secondary metabolite gene clusters in large-scale genome mining projects. Bioinformatics, 2020, 36 (15), pp.4345-4347. ⟨10.1093/bioinformatics/btaa517⟩. ⟨hal-03081849⟩
39 Consultations
0 Téléchargements

Altmetric

Partager

Gmail Facebook Twitter LinkedIn More