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Communication Dans Un Congrès Année : 2014

Searching for alternate RNA structures in genomic sequences

Résumé

We introduce the concept of RNA multi-structures, that is a formal grammar based framework specifically designed to model a set of alternate RNA secondary structures. Such alternate structures can either be a set of suboptimal foldings, or distinct stable folding states, or variants within an RNA family. We provide several such examples and propose an efficient algorithm to search for RNA multi-structures within a genomic sequence.
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Dates et versions

hal-01084319 , version 1 (19-11-2014)

Identifiants

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Azadeh Saffarian, Mathieu Giraud, Hélène Touzet. Searching for alternate RNA structures in genomic sequences. Computational Methods for Structural RNAs, CMSR'14, Sep 2014, Strasbourg, France. pp.13-24, ⟨10.15455/CMSR.2014.0002⟩. ⟨hal-01084319⟩
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