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Decrypting the Vibrio cholerae crtS site and its role on the coordinated replication of the two chromosomes

Francisco de Lemos Martins
Genetics. Sorbonne Université, 2018. English. ⟨NNT : 2018SORUS126⟩
Thèse tel-02926056v1

Enhanced emergence of antibiotic-resistant pathogenic bacteria after in vitro induction with cancer chemotherapy drugs

Alexandre Meunier , Virginie Nerich , Christine Fagnoni-Legat , Marion Richard , Didier Mazel , et al.
Journal of Antimicrobial Chemotherapy, 2019, 74 (6), pp.1572-1577. ⟨10.1093/jac/dkz070⟩
Article dans une revue hal-02083466v1
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A qnr-plasmid allows aminoglycosides to induce SOS in Escherichia coli

Anamaria Babosan , David Skurnik , Anaëlle Muggeo , Gerald Pier , Zeynep Baharoglu , et al.
eLife, 2022, 11, ⟨10.7554/eLife.69511⟩
Article dans une revue hal-03919325v1
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A checkpoint control orchestrates the replication of the two chromosomes of Vibrio cholerae.

Marie-Eve Val , Martial Marbouty , Francisco de Lemos Martins , Sean P Kennedy , Harry Kemble , et al.
Science Advances , 2016, 2 (4), pp.e1501914. ⟨10.1126/sciadv.1501914⟩
Article dans une revue pasteur-01309592v1
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Dynamic stepwise opening of integron attC DNA hairpins by SSB prevents toxicity and ensures functionality

Maj Svea Grieb , Aleksandra Nivina , Bevan L Cheeseman , Andreas Hartmann , Didier Mazel , et al.
Nucleic Acids Research, 2017, 45 (18), pp.10555-10563. ⟨10.1093/nar/gkx670⟩
Article dans une revue pasteur-01688527v1
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Chromosomal Position of Ribosomal Protein Genes Affects Long-Term Evolution of Vibrio cholerae

Leticia Larotonda , Damien Mornico , Varun Khanna , Joaquín Bernal-Bayard , Jean-Marc Ghigo , et al.
mBio, 2023, 14 (2), pp.e0343222. ⟨10.1128/mbio.03432-22⟩
Article dans une revue pasteur-04567331v1
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SOS, the formidable strategy of bacteria against aggressions

Zeynep Baharoglu , Didier Mazel
FEMS Microbiology Reviews, 2014, 38 (6), pp.1126-1145. ⟨10.1111/1574-6976.12077⟩
Article dans une revue pasteur-01423593v1
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Comparative Genomics of Synechococcus elongatus Explains the Phenotypic Diversity of the Strains

Marie Adomako , Dustin Ernst , Ryan Simkovsky , Yi-Yun Chao , Jingtong Wang , et al.
mBio, 2022, 13 (3), ⟨10.1128/mbio.00862-22⟩
Article dans une revue pasteur-04122004v1
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The integron integrase efficiently prevents the melting effect of Escherichia coli single-stranded DNA-binding protein on folded attC sites.

Céline Loot , Vincent Parissi , José Antonio Escudero , Jihane Amarir-Bouhram , David Bikard , et al.
Journal of Bacteriology, 2014, 196 (4), pp.762-771. ⟨10.1128/JB.01109-13⟩
Article dans une revue hal-01101080v1
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Genetic drivers of chromosomal integron stability

Egill Richard , Baptiste Darracq , Eloi Littner , Claire Vit , Clémence Whiteway , et al.
2022
Pré-publication, Document de travail pasteur-03824759v1
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The Proximity of Ribosomal Protein Genes to oriC Enhances Vibrio cholerae Fitness in the Absence of Multifork Replication

Alfonso Soler-Bistué , Michaël Timmermans , Didier Mazel
mBio, 2017, 8 (1), pp.e00097-17. ⟨10.1128/mBio.00097-17⟩
Article dans une revue pasteur-01689611v1
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Real-time tracking of bacterial membrane vesicles reveals enhanced membrane traffic upon antibiotic exposure

Julia Bos , Luis Cisneros , Didier Mazel
Science Advances , 2021, 7 (4), pp.eabd1033. ⟨10.1126/sciadv.abd1033⟩
Article dans une revue pasteur-03242762v1
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Comparative genomics of pathogenic lineages of Vibrio nigripulchritudo identifies virulence-associated traits

David Goudenège , Yannick Labreuche , Evelyne Krin , Dominique Ansquer , Sophie Mangenot , et al.
The International Society of Microbiologial Ecology Journal, 2013, Integrated genomics and post-genomics approaches in microbial ecology, 7 (10), pp.1985-1996. ⟨10.1038/ismej.2013.90⟩
Article dans une revue pasteur-01699814v1
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Identification of genes involved in low aminoglycoside-induced SOS response in Vibrio cholerae: a role for transcription stalling and Mfd helicase.

Z. Baharoglu , A. Babosan , D. Mazel
Nucleic Acids Research, 2014, 42 (4), pp.2366-2379. ⟨10.1093/nar/gkt1259⟩
Article dans une revue pasteur-01423602v1
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Cassette recombination dynamics within chromosomal integrons are regulated by toxin-antitoxin systems

Egill Richard , Baptiste Darracq , Eloi Littner , Claire Vit , Clémence Whiteway , et al.
Science Advances , 2024, 10 (2), pp.eadj3498. ⟨10.1126/sciadv.adj3498⟩
Article dans une revue hal-04397951v1
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Chromosomal Integrons are Genetically and Functionally Isolated Units of Genomes

Paula Blanco , Filipa Trig da Roza , Laura Toribio-Celestino , Lucía García-Pastor , Niccolò Caselli , et al.
2023
Pré-publication, Document de travail pasteur-04305666v1
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Integron cassettes commonly integrate into bacterial genomes via widespread non-classical attG sites

Céline Loot , Gael A Millot , Egill Richard , Eloi Littner , Claire Vit , et al.
Nature Microbiology, 2024, 9 (1), pp.228-240. ⟨10.1038/s41564-023-01548-y⟩
Article dans une revue pasteur-04384854v1
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Unmasking the ancestral activity of integron integrases reveals a smooth evolutionary transition during functional innovation

Jose Antonio Escudero , Celine Loot , Vincent Parissi , Aleksandra Nivina , Christiane Bouchier , et al.
Nature Communications, 2016, 7, pp.Article number 10937. ⟨10.1038/ncomms10937⟩
Article dans une revue pasteur-01292328v1
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RpoS Plays a Central Role in the SOS Induction by Sub-Lethal Aminoglycoside Concentrations in Vibrio cholerae

Zeynep Baharoglu , Evelyne Krin , Didier Mazel
PLoS Genetics, 2013, 9 (4), pp.e1003421. ⟨10.1371/journal.pgen.1003421⟩
Article dans une revue pasteur-01691109v1
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Macromolecular crowding links ribosomal protein gene dosage to growth rate in Vibrio cholerae

Alfonso Soler-Bistué , Sebastián Aguilar-Pierlé , Marc Garcia-Garcerà , Marie-Eve Val , Odile Sismeiro , et al.
BMC Biology, 2020, 18 (1), pp.43. ⟨10.1186/s12915-020-00777-5⟩
Article dans une revue pasteur-02562489v1
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RadD Contributes to R-Loop Avoidance in Sub-MIC Tobramycin

Veronica Negro , Evelyne Krin , Sebastian Aguilar Pierlé , Thibault Chaze , Quentin Giai Gianetto , et al.
mBio, 2019, 10 (4), pp.e01173-19. ⟨10.1128/mBio.01173-19⟩
Article dans une revue pasteur-02171194v1
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Interplay between Sublethal Aminoglycosides and Quorum Sensing: Consequences on Survival in V. cholerae

André Carvalho , Evelyne Krin , Chloé Korlowski , Didier Mazel , Zeynep Baharoglu
Cells, 2021, 10 (11), pp.3227. ⟨10.3390/cells10113227⟩
Article dans une revue pasteur-03443810v2
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Fuse or die: how to survive the loss of Dam in Vibrio cholerae

Marie-Eve Val , Sean Patrick Kennedy , Alfonso Soler-Bistué , Valérie Barbe , Christiane Bouchier , et al.
Molecular Microbiology, 2014, 91 (4), pp.665 - 678. ⟨10.1111/mmi.12483⟩
Article dans une revue inserm-01285641v1
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A new route for integron cassette dissemination among bacterial genomes

Céline Loot , Gael A Millot , Egill Richard , Claire Vit , Baptiste Darracq , et al.
2022
Pré-publication, Document de travail pasteur-03826688v1
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Identification of DNA binding motifs of the Mycobacterium tuberculosis PhoP/PhoR two-component signal transduction system.

Mena Cimino , Christophe Thomas , Amine Namouchi , Sarah Dubrac , Brigitte Gicquel , et al.
PLoS ONE, 2012, 7 (8), pp.e42876. ⟨10.1371/journal.pone.0042876⟩
Article dans une revue pasteur-01234357v1
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Systematic transcriptome analysis allows the identification of new type I and type II Toxin/Antitoxin systems located in the superintegron of Vibrio cholerae

Evelyne Krin , Zeynep Baharoglu , Odile Sismeiro , Hugo Varet , Jean-Yves Coppée , et al.
Research in Microbiology, 2023, 174 (1-2), pp.103997. ⟨10.1016/j.resmic.2022.103997⟩
Article dans une revue pasteur-03889562v1
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Deficiency in cytosine DNA methylation leads to high chaperonin expression and tolerance to aminoglycosides in Vibrio cholerae

André Carvalho , Didier Mazel , Zeynep Baharoglu
PLoS Genetics, 2021, 17 (10), pp.e1009748. ⟨10.1371/journal.pgen.1009748⟩
Article dans une revue pasteur-03417428v2
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Multiple Pathways of Genome Plasticity Leading to Development of Antibiotic Resistance

Zeynep Baharoglu , Geneviève Garriss , Didier Mazel
Antibiotics, 2013, Antibiotic Resistance, 2 (2), pp.288-315. ⟨10.3390/antibiotics2020288⟩
Article dans une revue pasteur-01691592v1
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Primary and promiscuous functions coexist during evolutionary innovation through whole protein domain acquisitions

José Antonio Escudero , Aleksandra Nivina , Harry Kemble , Céline Loot , Olivier Tenaillon , et al.
eLife, 2020, 9, pp.e58061. ⟨10.7554/eLife.58061⟩
Article dans une revue hal-03084482v1
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Sleeping ribosomes: bacterial signaling triggers RaiA mediated persistence to aminoglycosides

Manon Lang , Evelyne Krin , Chloé Korlowski , Odile Sismeiro , Hugo Varet , et al.
iScience, 2021, pp.103128. ⟨10.1016/j.isci.2021.103128⟩
Article dans une revue pasteur-03349141v1