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WiseScaffolder: an algorithm for the semi-automatic scaffolding of Next Generation Sequencing data

Gregory K. Farrant , Mark Hoebeke , Frédéric Partensky , Gwendoline Andres , Erwan Corre , et al.
BMC Bioinformatics, 2015, 16 pp.281. ⟨10.1186/s12859-015-0705-y⟩
Journal articles hal-01193001v1

Unexpectedly high bacteriochlorophyll a concentrations in neotropical tank bromeliads

Anne-Catherine Lehours , Anne-Hélène Le Jeune , Jean-Pierre Aguer , Régis Céréghino , Bruno Corbara , et al.
Environmental Microbiology Reports, 2016, 8 (5), pp.689 - 698. ⟨10.1111/1758-2229.12426⟩
Journal articles istex hal-01623623v1
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Ultraviolet stress delays chromosome replication in light/dark synchronized cells of the marine cyanobacterium Prochlorococcus marinus PCC9511.

Christian Kolowrat , Frédéric Partensky , Daniella Mella-Flores , Gildas Le Corguillé , Christophe Boutte , et al.
BMC Microbiology, 2010, 10, pp.204. ⟨10.1186/1471-2180-10-204⟩
Journal articles hal-00529495v1
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Thermoacclimation and genome adaptation of the membrane lipidome in marine Synechococcus

Justine Pittera , Juliette Jouhet , Solène Breton , Laurence Garczarek , Frédéric Partensky , et al.
Environmental Microbiology, 2018, 20 (2), pp.612-631. ⟨10.1111/1462-2920.13985⟩
Journal articles hal-01699416v1
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The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy

Laure Guillou , Dipankar Bachar , Stéphane Audic , David Bass , Cédric Berney , et al.
Nucleic Acids Research, 2013, 41 (D1), pp.D597-D604. ⟨10.1093/nar/gks1160⟩
Journal articles hal-01253994v1
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The hydrological context determines the beta-diversity of aerobic anoxygenic phototrophic bacteria in European Arctic seas but does not favor endemism

Anne-Catherine Lehours , Christian Jeanthon
Frontiers in Microbiology, 2015, 6, pp.638. ⟨10.3389/fmicb.2015.00638⟩
Journal articles hal-01218500v1
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The geographic impact on genomic divergence as revealed by comparison of nine Citromicrobial genomes

Qiang Zheng , Yanting Liu , Christian Jeanthon , Rui Zhang , Wenxin Lin , et al.
Applied and Environmental Microbiology, 2016, 82 (24), pp.7205-7216 ⟨10.1128/AEM.02495-16⟩
Journal articles hal-01390786v1
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The founding charter of the Genomic Observatories Network

Neil Davies , Dawn Field , Linda Amaral-Zettler , Melody S. Clark , John Deck , et al.
GigaScience, 2014, 3, pp.2. ⟨10.1186/2047-217X-3-2⟩
Journal articles hal-01110116v1
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Temperature is a key factor in Micromonas-virus interactions

David Demory , Laure Arsenieff , Nathalie Simon , Christophe Six , Fabienne Rigaut-Jalabert , et al.
ISME Journal, 2017, 11 (3), pp.601-612. ⟨10.1038/ismej.2016.160⟩
Journal articles hal-01464528v1
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Summer distribution and diversity of aerobic anoxygenic phototrophic bacteria in the Mediterranean Sea in relation to environmental variables

Anne-Catherine Lehours , Matthew T. Cottrell , Océane Dahan , David L. Kirchman , Christian Jeanthon
FEMS Microbiology Ecology, 2010, 74 (2), pp.397-409. ⟨10.1111/j.1574-6941.2010.00954.x⟩
Journal articles hal-00529310v1
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Summer community structure of aerobic anoxygenic phototrophic bacteria in the western Arctic Ocean

Dominique Boeuf , Matthew T. Cottrell , David L. Kirchman , Philippe Lebaron , Christian Jeanthon
FEMS Microbiology Ecology, 2013, 85 (3), pp.417-432. ⟨10.1111/1574-6941.12130⟩
Journal articles hal-01140647v1
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Summer Abundance and Distribution of Proteorhodopsin Genes in the Western Arctic Ocean

Dominique Boeuf , Raphaël Lami , Emelyne Cunnington , Christian Jeanthon
Frontiers in Microbiology, 2016, 7, pp.1584. ⟨10.3389/fmicb.2016.01584⟩
Journal articles hal-01391017v1

Successional changes in bacterial community assemblages following anoxia in the hypolimnion of a eutrophic lake

Anne-Catherine Lehours , Corinne Bardot , Pierre-François Pelisson , Annie Guedon , Stéphane Pesce , et al.
Aquatic Microbial Ecology, 2009, 54 (1), pp.71-82. ⟨10.3354/ame01260⟩
Journal articles hal-00528269v1
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Spatiotemporal changes in the genetic diversity of harmful algal blooms caused by the toxic dinoflagellate Alexandrium minutum

Aliou Dia , Laure Guillou , Stéphane Mauger , Estelle Bigeard , Dominique Marie , et al.
Molecular Ecology, 2014, 23 (3), pp.549-560. ⟨10.1111/mec.12617⟩
Journal articles hal-01132961v1
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Silicimonas algicola gen. nov., sp. nov., a member of the Roseobacter clade isolated from the cell surface of the marine diatom Thalassiosira delicatula

Klevi Crenn , Delphine Serpin , Cendrella Lepleux , Jörg Overmann , Christian Jeanthon
International Journal of Systematic and Evolutionary Microbiology, 2016, 66 (11), pp.4580 - 4588. ⟨10.1099/ijsem.0.001394⟩
Journal articles hal-01444937v1
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Self-regulating genomic island encoding tandem regulators confers chromatic acclimation to marine Synechococcus

Joseph E. Sanfilippo , Adam A. Nguyen , Jonathan A. Karty , Animesh Shukla , Wendy M. Schluchter , et al.
Proceedings of the National Academy of Sciences of the United States of America, 2016, 113 (21), pp.6077-6082. ⟨10.1073/pnas.1600625113⟩
Journal articles hal-01320666v1
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Revision of the Genus Micromonas Manton et Parke (Chlorophyta, Mamiellophyceae), of the Type Species M. pusilla (Butcher) Manton & Parke and of the Species M. commoda van Baren, Bachy and Worden and Description of Two New Species Based on the Genetic and Phenotypic Characterization of Cultured Isolates

Nathalie Simon , Elodie Foulon , Daphné Grulois , Christophe Six , Yves Desdevises , et al.
Protist, 2017, 168 (5), pp.612-635. ⟨10.1016/j.protis.2017.09.002⟩
Journal articles hal-01614739v1
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Responses of the picoprasinophyte Micromonas commoda to light and ultraviolet stress

Marie L. Cuvelier , Jian Guo , Alejandra C. Ortiz , Marijke J. van Baren , Muhammad Akram Tariq , et al.
PLoS ONE, 2017, 12 (3), pp.e0172135. ⟨10.1371/journal.pone.0172135⟩
Journal articles hal-01490543v1
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Proliferation of purple sulphur bacteria at the sediment surface affects intertidal mat diversity and functionality

Cédric Hubas , Bruno Jesus , Mickael Ruivo , Tarik Méziane , Najet Thiney , et al.
PLoS ONE, 2013, 8 (12), pp.e82329. ⟨10.1371/journal.pone.0082329⟩
Journal articles hal-00916001v1

Prochlorococcus: Advantages and Limits of Minimalism

Frédéric Partensky , Laurence Garczarek
Annual Review of Marine Science, 2010, Annual Review of Marine Science, 2, pp.305-331. ⟨10.1146/annurev-marine-120308-081034⟩
Journal articles hal-01218511v1
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Prochlorococcus and Synechococcus have Evolved Different Adaptive Mechanisms to Cope with Light and UV Stress.

Daniella Mella-Flores , Christophe Six , Morgane Ratin , Frédéric Partensky , Christophe Boutte , et al.
Frontiers in Microbiology, 2012, 3, pp.285. ⟨10.3389/fmicb.2012.00285⟩
Journal articles hal-00815833v1
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Pigment signatures of phytoplankton communities in the Beaufort Sea

Pierre Coupel , Atsushi Matsuoka , Diana Ruiz-Pino , M. Gosselin , Dominique Marie , et al.
Biogeosciences, 2015, 12 (4), pp.991-1006. ⟨10.5194/bg-12-991-2015⟩
Journal articles hal-01143901v1
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Picophytoplankton biomass distribution in the global ocean

E. T. Buitenhuis , W. K. W. Li , Daniel Vaulot , M. W. Lomas , M. R. Landry , et al.
Earth System Science Data, 2012, 4 (1), pp.201-242. ⟨10.5194/essd-4-37-2012⟩
Journal articles hal-00939662v1
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Phylogeography and pigment type diversity of Synechococcus cyanobacteria in surface waters of the northwestern Pacific Ocean

Xiaomin Xia , Frédéric Partensky , Laurence Garczarek , Koji Suzuki , Cui Guo , et al.
Environmental Microbiology, 2016, 19 (1), pp.142-158 ⟨10.1111/1462-2920.13541⟩
Journal articles hal-01377154v1

Phycourobilin in trichromatic phycocyanin from oceanic cyanobacteria is formed post-translationally by a phycoerythrobilin lyase-isomerase.

Nicolas Blot , Xian-Jun Wu , Jean-Claude Thomas , Juan Zhang , Laurence Garczarek , et al.
Journal of Biological Chemistry, 2009, 284 (14), pp.9290-8. ⟨10.1074/jbc.M809784200⟩
Journal articles hal-00529452v1

Phycoerythrin-specific bilin lyase-isomerase controls blue-green chromatic acclimation in marine Synechococcus.

Animesh Shukla , Avijit Biswas , Nicolas Blot , Frédéric Partensky , Jonathan A Karty , et al.
Proceedings of the National Academy of Sciences of the United States of America, 2012, 109 (49), pp.20136-41. ⟨10.1073/pnas.1211777109⟩
Journal articles hal-01071892v1
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Photosystem II repair in marine diatoms with contrasting photophysiologies

Johann Lavaud , Christophe Six , Douglas A Campbell
Photosynthesis Research, 2016, 127 (2), pp.189-199. ⟨10.1007/s11120-015-0172-3⟩
Journal articles hal-01176261v1

Photosystem II and Pigment Dynamics among Ecotypes of the Green Alga Ostreococcus

Christophe Six , Ryan Sherrard , Marie Lionard , Suzanne Roy , Douglas A. Campbell
Plant Physiology, 2009, 151 (1), pp.379-390. ⟨10.1104/pp.109.140566⟩
Journal articles hal-01218514v1

Photosystem I gene cassettes are present in marine virus genomes

Itai Sharon , Ariella Alperovitch , Forest Rohwer , Matthew Haynes , Fabian Glaser , et al.
Nature, 2009, 461 (7261), pp.258-262. ⟨10.1038/nature08284⟩
Journal articles hal-01218513v1

Parvilucifera rostrata sp nov (Perkinsozoa), a Novel Parasitoid that Infects Planktonic Dinoflagellates

Frederic Lepelletier , Sergey A. Karpov , Sophie Le Panse , Estelle Bigeard , Alf Skovgaard , et al.
Protist, 2014, 165 (1), pp.31-49. ⟨10.1016/j.protis.2013.09.005⟩
Journal articles hal-01218502v1